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Sample GSM99470

Query DataSets for GSM99470

Status

Public on Mar 08, 2006

Title

brain, Right Temporal Lobe: Extract77_le1

Sample type

RNA

Source name

brain, Right Temporal Lobe

Organism

Homo sapiens

Characteristics

tissue: brain, Right Temporal Lobe
histology: GBM
tumor number (as appears in figure 3): 1342
age: 54
gender: MALE
grade: 4
living: DECEASED
survival time: 224
survival cluster: SC2
hc_74_samples: HC2B
hc_85_samples: HC2B
array: 133A

Extracted molecule

total RNA

Extraction protocol

RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).

Label protocol

Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).

Hybridization protocol

Standard Affymetrix protocols were used.

Scan protocol

Standard Affymetrix protocols were used.

Description

GBM
Treatment, type=remove

Submission date

Mar 08, 2006

Last update date

Sep 11, 2014

Contact name

Winnie Liang

E-mail(s)

wliang@tgen.org

Organization name

Translational Genomics

Street address

445 N. Fifth Street

City

Phoenix

State/province

ZIP/Postal code

85012

Country

USA

Platform ID

GPL96

Series (1)

GSE4412

freij-affy-human-91666

Relations

Reanalyzed by

GSM326662

Reanalyzed by

GSE61335

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS 5 or GCOS software.
ABS_CALL	The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE	The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	1716.5448	P	0.003595
AFFX-BioB-M_at	2799.1172	P	0.000225
AFFX-BioB-3_at	1342.1183	P	0.004484
AFFX-BioC-5_at	4570.416	P	0.000169
AFFX-BioC-3_at	3645.75	P	0.000044
AFFX-BioDn-5_at	4385.9653	P	0.000095
AFFX-BioDn-3_at	25723.525	P	0.000095
AFFX-CreX-5_at	41102.992	P	0.000044
AFFX-CreX-3_at	60100.637	P	0.000044
AFFX-DapX-5_at	198.19681	A	0.147939
AFFX-DapX-M_at	208.18155	A	0.340661
AFFX-DapX-3_at	34.858173	A	0.916408
AFFX-LysX-5_at	10.587742	A	0.883887
AFFX-LysX-M_at	30.1975	A	0.804734
AFFX-LysX-3_at	120.885925	A	0.425962
AFFX-PheX-5_at	11.167914	A	0.916408
AFFX-PheX-M_at	15.092134	A	0.973889
AFFX-PheX-3_at	76.79065	A	0.686277
AFFX-ThrX-5_at	156.05513	A	0.470241
AFFX-ThrX-M_at	38.304665	A	0.772364

Total number of rows: 22283

Table truncated, full table size 687 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM99470.CEL.gz	3.5 Mb	(ftp)(http)	CEL