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Status
Public on Mar 08, 2006
Title
brain, Right Temporal Lobe: Extract78_le2
Sample type
RNA
Source name
brain, Right Temporal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Temporal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
3815.895
P
0.002556
AFFX-BioB-M_at
13663.907
P
0.000127
AFFX-BioB-3_at
4921.377
P
0.000972
AFFX-BioC-5_at
12140.909
P
0.000081
AFFX-BioC-3_at
13618.361
P
0.000060
AFFX-BioDn-5_at
12576.244
P
0.000081
AFFX-BioDn-3_at
75598.42
P
0.000070
AFFX-CreX-5_at
135821.2
P
0.000044
AFFX-CreX-3_at
202384.2
P
0.000044
AFFX-DapX-5_at
360.76114
A
0.156732
AFFX-DapX-M_at
480.88803
A
0.147939
AFFX-DapX-3_at
30.114283
A
0.997977
AFFX-LysX-5_at
251.79211
A
0.396920
AFFX-LysX-M_at
114.494865
A
0.686277
AFFX-LysX-3_at
174.88025
A
0.455413
AFFX-PheX-5_at
40.320126
A
0.897835
AFFX-PheX-M_at
83.48204
A
0.897835
AFFX-PheX-3_at
361.73715
A
0.470241
AFFX-ThrX-5_at
86.986206
A
0.794268
AFFX-ThrX-M_at
185.61446
A
0.514890
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99473.CEL.gz
3.2 Mb
(ftp) (http) CEL
