GEO help: Mouse over screen elements for information.
Status
Public on Mar 08, 2006
Title
brain, Right Temporal Lobe: Extract81_le2
Sample type
RNA
Source name
brain, Right Temporal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Temporal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
3266.4714
P
0.000754
AFFX-BioB-M_at
9514.609
P
0.000147
AFFX-BioB-3_at
2990.553
P
0.011384
AFFX-BioC-5_at
10099.09
P
0.000095
AFFX-BioC-3_at
8525.164
P
0.000081
AFFX-BioDn-5_at
7747.5415
P
0.000169
AFFX-BioDn-3_at
51548.79
P
0.000127
AFFX-CreX-5_at
84184.93
P
0.000044
AFFX-CreX-3_at
127719.516
P
0.000044
AFFX-DapX-5_at
177.81169
A
0.500000
AFFX-DapX-M_at
339.01096
A
0.368438
AFFX-DapX-3_at
50.050083
A
0.986189
AFFX-LysX-5_at
374.70865
A
0.156732
AFFX-LysX-M_at
638.0653
A
0.262827
AFFX-LysX-3_at
38.775967
A
0.686277
AFFX-PheX-5_at
73.66667
A
0.794268
AFFX-PheX-M_at
22.824915
A
0.937071
AFFX-PheX-3_at
399.5582
A
0.631562
AFFX-ThrX-5_at
81.90613
A
0.883887
AFFX-ThrX-M_at
220.93991
A
0.455413
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99479.CEL.gz
3.4 Mb
(ftp) (http) CEL
