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Sample GSM994797 Query DataSets for GSM994797
Status Public on Mar 01, 2014
Title Mice fed Normal diet for 6 weeks replicate 2
Sample type RNA
 
Source name Mice fed Normal diet for 6 weeks replicate 2
Organism Mus musculus
Characteristics strain: C57BL/6J
age: 11 weeks
tissue: Liver
Treatment protocol C57BL/6J mice were fed a high-fat diet (HFD) or normal diet (ND) and sacrificed at 9 time-points (0, 2, 4, 6, 8, 12, 16, 20 and 24 weeks) over 24 weeks.
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description L6N2
Data processing The data were normalised by quantile method using ArrayAssist® (Stratagene, La Jolla, USA) and R statistical language v. 2.4.1.
 
Submission date Aug 30, 2012
Last update date Mar 01, 2014
Contact name Myung-Sook Choi
E-mail(s) mschoi@knu.ac.kr
Phone 821085881950
Organization name Kyungpook National University
Department Food and Nutrition
Lab Nutrigenomics
Street address 1370, Sankyuk-Dong, Buk-gu
City Daegu
ZIP/Postal code 702-701
Country South Korea
 
Platform ID GPL6887
Series (2)
GSE39549 Time-course microarrays reveal early activation of the immune transcriptome and adipokine dysregulation leads to fibrosis in visceral adipose depots during diet-induced obesity
GSE40481 Time-dependent network analysis reveals molecular targets underying the development of diet-induced obesity and non-alcoholic steatohepatitis.

Data table header descriptions
ID_REF
VALUE normalized

Data table
ID_REF VALUE
ILMN_1212602 6.7388844
ILMN_1212603 6.6845145
ILMN_1212605 9.352892
ILMN_1212607 7.095894
ILMN_1212612 7.413901
ILMN_1212614 6.6053486
ILMN_1212619 6.7737374
ILMN_1212623 7.0066404
ILMN_1212625 10.102712
ILMN_1212626 7.1379967
ILMN_1212628 6.8141437
ILMN_1212632 7.76589
ILMN_1212633 7.442549
ILMN_1212636 10.928832
ILMN_1212637 11.117797
ILMN_1212638 13.0184555
ILMN_1212639 8.231296
ILMN_1212644 6.9098916
ILMN_1212645 12.653435
ILMN_1212646 10.393766

Total number of rows: 45281

Table truncated, full table size 992 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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