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Sample GSM99482 Query DataSets for GSM99482
Status Public on Mar 08, 2006
Title brain, Right Temporal Parietal: Extract83_le1
Sample type RNA
 
Source name brain, Right Temporal Parietal
Organism Homo sapiens
Characteristics tissue: brain, Right Temporal Parietal
histology: GBM
tumor number (as appears in figure 3): 1032
age: 34
gender: FEMALE
grade: 4
living: DECEASED
survival time: 90
survival cluster: SC2
hc_74_samples: HC1B
hc_85_samples: HC1B
array: 133A
Extracted molecule total RNA
Extraction protocol RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
 
Hybridization protocol Standard Affymetrix protocols were used.
Scan protocol Standard Affymetrix protocols were used.
Description GBM
Treatment, type=remove
 
Submission date Mar 08, 2006
Last update date Sep 11, 2014
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL96
Series (1)
GSE4412 freij-affy-human-91666
Relations
Reanalyzed by GSM326691
Reanalyzed by GSE61335

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1906.0269 P 0.004484
AFFX-BioB-M_at 3475.0737 P 0.000225
AFFX-BioB-3_at 1403.6189 P 0.016670
AFFX-BioC-5_at 5337.6445 P 0.000258
AFFX-BioC-3_at 4390.09 P 0.000127
AFFX-BioDn-5_at 4274.349 P 0.000195
AFFX-BioDn-3_at 31994.0 P 0.000110
AFFX-CreX-5_at 52782.336 P 0.000044
AFFX-CreX-3_at 74718.11 P 0.000044
AFFX-DapX-5_at 215.83644 A 0.156732
AFFX-DapX-M_at 230.45279 A 0.368438
AFFX-DapX-3_at 16.52638 A 0.984817
AFFX-LysX-5_at 32.120266 A 0.440646
AFFX-LysX-M_at 73.19753 A 0.645547
AFFX-LysX-3_at 10.96825 A 0.737173
AFFX-PheX-5_at 34.617107 A 0.852061
AFFX-PheX-M_at 36.932323 A 0.921998
AFFX-PheX-3_at 109.3509 A 0.783476
AFFX-ThrX-5_at 93.72065 A 0.588620
AFFX-ThrX-M_at 14.341128 A 0.897835

Total number of rows: 22283

Table truncated, full table size 687 Kbytes.




Supplementary file Size Download File type/resource
GSM99482.CEL.gz 3.4 Mb (ftp)(http) CEL

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