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Status
Public on Mar 08, 2006
Title
brain, Right Temporal Parietal: Extract83_le1
Sample type
RNA
Source name
brain, Right Temporal Parietal
Organism
Homo sapiens
Characteristics
tissue: brain, Right Temporal Parietal histology: GBM tumor number (as appears in figure 3): 1032 age: 34 gender: FEMALE grade: 4 living: DECEASED survival time: 90 survival cluster: SC2 hc_74_samples: HC1B hc_85_samples: HC1B array: 133A
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM Treatment, type=remove
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org
Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96
Series (1)
Relations
Reanalyzed by
GSM326691
Reanalyzed by
GSE61335
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS 5 or GCOS software.
ABS_CALL
The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE
The detection p-value calculated by the MAS 5 or GCOS software
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1906.0269
P
0.004484
AFFX-BioB-M_at
3475.0737
P
0.000225
AFFX-BioB-3_at
1403.6189
P
0.016670
AFFX-BioC-5_at
5337.6445
P
0.000258
AFFX-BioC-3_at
4390.09
P
0.000127
AFFX-BioDn-5_at
4274.349
P
0.000195
AFFX-BioDn-3_at
31994.0
P
0.000110
AFFX-CreX-5_at
52782.336
P
0.000044
AFFX-CreX-3_at
74718.11
P
0.000044
AFFX-DapX-5_at
215.83644
A
0.156732
AFFX-DapX-M_at
230.45279
A
0.368438
AFFX-DapX-3_at
16.52638
A
0.984817
AFFX-LysX-5_at
32.120266
A
0.440646
AFFX-LysX-M_at
73.19753
A
0.645547
AFFX-LysX-3_at
10.96825
A
0.737173
AFFX-PheX-5_at
34.617107
A
0.852061
AFFX-PheX-M_at
36.932323
A
0.921998
AFFX-PheX-3_at
109.3509
A
0.783476
AFFX-ThrX-5_at
93.72065
A
0.588620
AFFX-ThrX-M_at
14.341128
A
0.897835
Total number of rows: 22283 Table truncated, full table size 687 Kbytes .Supplementary file
Size
Download
File type/resource
GSM99482.CEL.gz
3.4 Mb
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CEL