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Status
Public on Mar 08, 2006
Title
brain, left frontal temporal lobe: Extract1_le2
Sample type
RNA
Source name
brain, left frontal temporal lobe
Organism
Homo sapiens Characteristics
tissue: brain, left frontal temporal lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
3808.7532
P
0.001248
AFFX-BioB-M_at
8425.628
P
0.000169
AFFX-BioB-3_at
3372.5312
P
0.004484
AFFX-BioC-5_at
12083.91
P
0.000070
AFFX-BioC-3_at
9688.739
P
0.000052
AFFX-BioDn-5_at
10473.064
P
0.000052
AFFX-BioDn-3_at
61178.332
P
0.000095
AFFX-CreX-5_at
126515.26
P
0.000044
AFFX-CreX-3_at
174055.45
P
0.000044
AFFX-DapX-5_at
120.675735
A
0.603080
AFFX-DapX-M_at
396.7821
A
0.485110
AFFX-DapX-3_at
115.024475
A
0.794268
AFFX-LysX-5_at
76.360016
A
0.699394
AFFX-LysX-M_at
425.5707
A
0.382599
AFFX-LysX-3_at
135.14047
A
0.396920
AFFX-PheX-5_at
28.627481
A
0.868639
AFFX-PheX-M_at
146.46483
A
0.760937
AFFX-PheX-3_at
436.79617
A
0.588620
AFFX-ThrX-5_at
60.97559
A
0.910522
AFFX-ThrX-M_at
47.69413
A
0.659339
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99491.CEL.gz
3.3 Mb
(ftp) (http) CEL
