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Sample GSM99495 Query DataSets for GSM99495
Status Public on Mar 08, 2006
Title brain, left frontal temporal lobe: Extract3_le2
Sample type RNA
 
Source name brain, left frontal temporal lobe
Organism Homo sapiens
Characteristics tissue: brain, left frontal temporal lobe
histology: GBM
tumor number (as appears in figure 3): 1469
age: 56
gender: MALE
grade: 4
living: DECEASED
survival time: 153
survival cluster: SC2
hc_74_samples: HC2B
hc_85_samples: HC2B
array: 133B
Extracted molecule total RNA
Extraction protocol RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
 
Hybridization protocol Standard Affymetrix protocols were used.
Scan protocol Standard Affymetrix protocols were used.
Description GBM
Treatment, type=remove
 
Submission date Mar 08, 2006
Last update date Sep 11, 2014
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL97
Series (1)
GSE4412 freij-affy-human-91666
Relations
Reanalyzed by GSE61335

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 4314.3613 P 0.002556
AFFX-BioB-M_at 9530.73 P 0.000446
AFFX-BioB-3_at 3659.9856 P 0.007620
AFFX-BioC-5_at 12711.477 P 0.000127
AFFX-BioC-3_at 11186.607 P 0.000081
AFFX-BioDn-5_at 10359.892 P 0.000169
AFFX-BioDn-3_at 67178.695 P 0.000225
AFFX-CreX-5_at 97757.49 P 0.000044
AFFX-CreX-3_at 189124.1 P 0.000044
AFFX-DapX-5_at 52.1998 A 0.737173
AFFX-DapX-M_at 319.41943 A 0.514890
AFFX-DapX-3_at 100.310425 A 0.973889
AFFX-LysX-5_at 519.39014 A 0.275146
AFFX-LysX-M_at 446.66714 A 0.686277
AFFX-LysX-3_at 235.28238 A 0.455413
AFFX-PheX-5_at 68.01068 A 0.891021
AFFX-PheX-M_at 92.01732 A 0.916408
AFFX-PheX-3_at 901.1623 A 0.396920
AFFX-ThrX-5_at 99.6077 A 0.897835
AFFX-ThrX-M_at 519.00226 A 0.455413

Total number of rows: 22645

Table truncated, full table size 686 Kbytes.




Supplementary file Size Download File type/resource
GSM99495.CEL.gz 3.3 Mb (ftp)(http) CEL

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