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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract6_le2
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
AA
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
2299.082
P
0.003212
AFFX-BioB-M_at
5001.9585
P
0.000127
AFFX-BioB-3_at
3023.435
P
0.005565
AFFX-BioC-5_at
7557.4453
P
0.000127
AFFX-BioC-3_at
6021.079
P
0.000110
AFFX-BioDn-5_at
6274.738
P
0.000060
AFFX-BioDn-3_at
47204.59
P
0.000127
AFFX-CreX-5_at
62871.375
P
0.000044
AFFX-CreX-3_at
111059.016
P
0.000052
AFFX-DapX-5_at
245.7297
A
0.227636
AFFX-DapX-M_at
262.00107
A
0.440646
AFFX-DapX-3_at
233.41798
A
0.712257
AFFX-LysX-5_at
44.936234
A
0.588620
AFFX-LysX-M_at
112.53878
A
0.574038
AFFX-LysX-3_at
140.31274
A
0.529760
AFFX-PheX-5_at
61.81739
A
0.760937
AFFX-PheX-M_at
41.513817
A
0.921998
AFFX-PheX-3_at
417.73956
A
0.617401
AFFX-ThrX-5_at
428.56467
A
0.672921
AFFX-ThrX-M_at
168.32626
A
0.737173
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99501.CEL.gz
3.2 Mb
(ftp) (http) CEL
