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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract10_le1
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
AM
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1767.881
P
0.002867
AFFX-BioB-M_at
4196.135
P
0.000044
AFFX-BioB-3_at
1519.2195
P
0.000195
AFFX-BioC-5_at
5693.8477
P
0.000070
AFFX-BioC-3_at
4851.5474
P
0.000060
AFFX-BioDn-5_at
5922.447
P
0.000052
AFFX-BioDn-3_at
30037.266
P
0.000081
AFFX-CreX-5_at
38228.16
P
0.000044
AFFX-CreX-3_at
53745.793
P
0.000044
AFFX-DapX-5_at
86.28339
A
0.275146
AFFX-DapX-M_at
135.12854
A
0.313723
AFFX-DapX-3_at
10.641421
A
0.976071
AFFX-LysX-5_at
74.10574
A
0.500000
AFFX-LysX-M_at
54.11235
A
0.672921
AFFX-LysX-3_at
102.17672
A
0.396920
AFFX-PheX-5_at
12.748242
A
0.966323
AFFX-PheX-M_at
19.911486
A
0.904333
AFFX-PheX-3_at
162.45706
A
0.724854
AFFX-ThrX-5_at
21.977568
A
0.921998
AFFX-ThrX-M_at
34.286034
A
0.574038
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99508.CEL.gz
3.4 Mb
(ftp) (http) CEL
