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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract11_le1
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
AO
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1608.486
P
0.001593
AFFX-BioB-M_at
4840.7764
P
0.000297
AFFX-BioB-3_at
1607.4443
P
0.000972
AFFX-BioC-5_at
6634.8423
P
0.000147
AFFX-BioC-3_at
4793.1675
P
0.000081
AFFX-BioDn-5_at
4728.0234
P
0.000060
AFFX-BioDn-3_at
28709.908
P
0.000147
AFFX-CreX-5_at
41603.395
P
0.000044
AFFX-CreX-3_at
69459.99
P
0.000044
AFFX-DapX-5_at
198.46526
A
0.354453
AFFX-DapX-M_at
207.60878
A
0.287743
AFFX-DapX-3_at
65.815994
A
0.843268
AFFX-LysX-5_at
147.38077
A
0.382599
AFFX-LysX-M_at
106.59975
A
0.686277
AFFX-LysX-3_at
222.50125
A
0.340661
AFFX-PheX-5_at
29.548677
A
0.772364
AFFX-PheX-M_at
26.44181
A
0.941556
AFFX-PheX-3_at
174.09142
A
0.772364
AFFX-ThrX-5_at
20.03463
A
0.978098
AFFX-ThrX-M_at
59.73649
A
0.749204
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99510.CEL.gz
3.4 Mb
(ftp) (http) CEL
