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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract12_le1
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
AO
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
2137.849
P
0.021902
AFFX-BioB-M_at
3046.426
P
0.000581
AFFX-BioB-3_at
1321.6674
P
0.030976
AFFX-BioC-5_at
6657.199
P
0.000446
AFFX-BioC-3_at
4574.6875
P
0.000081
AFFX-BioDn-5_at
3635.859
P
0.001248
AFFX-BioDn-3_at
29025.379
P
0.000169
AFFX-CreX-5_at
42789.426
P
0.000044
AFFX-CreX-3_at
78213.43
P
0.000044
AFFX-DapX-5_at
309.83902
A
0.327079
AFFX-DapX-M_at
336.23312
A
0.603080
AFFX-DapX-3_at
409.01068
A
0.287726
AFFX-LysX-5_at
427.64755
A
0.300606
AFFX-LysX-M_at
72.97278
A
0.960339
AFFX-LysX-3_at
322.8148
A
0.631562
AFFX-PheX-5_at
64.18285
A
0.852061
AFFX-PheX-M_at
27.209251
A
0.953518
AFFX-PheX-3_at
590.7735
A
0.574038
AFFX-ThrX-5_at
117.82612
A
0.544587
AFFX-ThrX-M_at
48.79712
A
0.910522
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99512.CEL.gz
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(ftp) (http) CEL
