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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract12_le2
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens
Characteristics
tissue: brain, Left frontal Lobe histology: OLIGO tumor number (as appears in figure 3): 613 age: 35 gender: FEMALE grade: 3 living: DECEASED survival time: 206 survival cluster: SC2 hc_74_samples: HC2A hc_85_samples: HC2A array: 133B
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
AO Treatment, type=remove
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org
Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97
Series (1)
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS 5 or GCOS software.
ABS_CALL
The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE
The detection p-value calculated by the MAS 5 or GCOS software
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
4610.761
P
0.009337
AFFX-BioB-M_at
8064.9585
P
0.000509
AFFX-BioB-3_at
2926.7004
P
0.015183
AFFX-BioC-5_at
11533.781
P
0.000195
AFFX-BioC-3_at
9465.15
P
0.000110
AFFX-BioDn-5_at
7170.021
P
0.000110
AFFX-BioDn-3_at
60477.0
P
0.000297
AFFX-CreX-5_at
90691.78
P
0.000044
AFFX-CreX-3_at
152343.11
P
0.000044
AFFX-DapX-5_at
162.37189
A
0.603080
AFFX-DapX-M_at
298.37482
A
0.411380
AFFX-DapX-3_at
307.95358
A
0.824672
AFFX-LysX-5_at
74.00926
A
0.559354
AFFX-LysX-M_at
925.81146
A
0.411380
AFFX-LysX-3_at
43.138237
A
0.559354
AFFX-PheX-5_at
138.1152
A
0.712257
AFFX-PheX-M_at
57.378754
A
0.883887
AFFX-PheX-3_at
276.00433
A
0.760937
AFFX-ThrX-5_at
63.81519
A
0.966323
AFFX-ThrX-M_at
679.8374
A
0.300606
Total number of rows: 22645 Table truncated, full table size 686 Kbytes .Supplementary file
Size
Download
File type/resource
GSM99513.CEL.gz
3.3 Mb
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CEL