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Sample GSM99513 Query DataSets for GSM99513
Status Public on Mar 08, 2006
Title brain, Left frontal Lobe: Extract12_le2
Sample type RNA
 
Source name brain, Left frontal Lobe
Organism Homo sapiens
Characteristics tissue: brain, Left frontal Lobe
histology: OLIGO
tumor number (as appears in figure 3): 613
age: 35
gender: FEMALE
grade: 3
living: DECEASED
survival time: 206
survival cluster: SC2
hc_74_samples: HC2A
hc_85_samples: HC2A
array: 133B
Extracted molecule total RNA
Extraction protocol RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
 
Hybridization protocol Standard Affymetrix protocols were used.
Scan protocol Standard Affymetrix protocols were used.
Description AO
Treatment, type=remove
 
Submission date Mar 08, 2006
Last update date May 22, 2013
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL97
Series (1)
GSE4412 freij-affy-human-91666

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 4610.761 P 0.009337
AFFX-BioB-M_at 8064.9585 P 0.000509
AFFX-BioB-3_at 2926.7004 P 0.015183
AFFX-BioC-5_at 11533.781 P 0.000195
AFFX-BioC-3_at 9465.15 P 0.000110
AFFX-BioDn-5_at 7170.021 P 0.000110
AFFX-BioDn-3_at 60477.0 P 0.000297
AFFX-CreX-5_at 90691.78 P 0.000044
AFFX-CreX-3_at 152343.11 P 0.000044
AFFX-DapX-5_at 162.37189 A 0.603080
AFFX-DapX-M_at 298.37482 A 0.411380
AFFX-DapX-3_at 307.95358 A 0.824672
AFFX-LysX-5_at 74.00926 A 0.559354
AFFX-LysX-M_at 925.81146 A 0.411380
AFFX-LysX-3_at 43.138237 A 0.559354
AFFX-PheX-5_at 138.1152 A 0.712257
AFFX-PheX-M_at 57.378754 A 0.883887
AFFX-PheX-3_at 276.00433 A 0.760937
AFFX-ThrX-5_at 63.81519 A 0.966323
AFFX-ThrX-M_at 679.8374 A 0.300606

Total number of rows: 22645

Table truncated, full table size 686 Kbytes.




Supplementary file Size Download File type/resource
GSM99513.CEL.gz 3.3 Mb (ftp)(http) CEL

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