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Sample GSM99515 Query DataSets for GSM99515
Status Public on Mar 08, 2006
Title brain, Left frontal Lobe: Extract13_le2
Sample type RNA
 
Source name brain, Left frontal Lobe
Organism Homo sapiens
Characteristics tissue: brain, Left frontal Lobe
histology: OLIGO
tumor number (as appears in figure 3): 742
age: 24
gender: MALE
grade: 3
living: DECEASED
survival time: 515
survival cluster: SC1
hc_74_samples: HC1A
hc_85_samples: HC1A
array: 133B
Extracted molecule total RNA
Extraction protocol RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
 
Hybridization protocol Standard Affymetrix protocols were used.
Scan protocol Standard Affymetrix protocols were used.
Description AO
Treatment, type=remove
 
Submission date Mar 08, 2006
Last update date May 22, 2013
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL97
Series (1)
GSE4412 freij-affy-human-91666

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 4010.2754 P 0.004017
AFFX-BioB-M_at 7256.2036 P 0.000581
AFFX-BioB-3_at 3374.602 P 0.002867
AFFX-BioC-5_at 10411.091 P 0.000110
AFFX-BioC-3_at 8582.708 P 0.000110
AFFX-BioDn-5_at 6773.4067 P 0.000110
AFFX-BioDn-3_at 58135.203 P 0.000258
AFFX-CreX-5_at 98446.37 P 0.000044
AFFX-CreX-3_at 149534.78 P 0.000044
AFFX-DapX-5_at 294.17377 A 0.425962
AFFX-DapX-M_at 636.4909 A 0.139482
AFFX-DapX-3_at 134.8287 A 0.876428
AFFX-LysX-5_at 287.08514 A 0.327079
AFFX-LysX-M_at 439.3799 A 0.603080
AFFX-LysX-3_at 392.5729 A 0.327079
AFFX-PheX-5_at 85.0202 A 0.883887
AFFX-PheX-M_at 69.119125 A 0.824672
AFFX-PheX-3_at 256.20102 A 0.794268
AFFX-ThrX-5_at 292.11215 A 0.470241
AFFX-ThrX-M_at 252.15944 A 0.340661

Total number of rows: 22645

Table truncated, full table size 686 Kbytes.




Supplementary file Size Download File type/resource
GSM99515.CEL.gz 3.3 Mb (ftp)(http) CEL

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