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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract16_le1
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
AO
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1219.9146
P
0.001410
AFFX-BioB-M_at
4036.6353
P
0.000446
AFFX-BioB-3_at
1304.8911
P
0.006871
AFFX-BioC-5_at
4952.039
P
0.000127
AFFX-BioC-3_at
3881.0508
P
0.000095
AFFX-BioDn-5_at
4574.1978
P
0.000052
AFFX-BioDn-3_at
25559.22
P
0.000127
AFFX-CreX-5_at
38980.754
P
0.000044
AFFX-CreX-3_at
66999.14
P
0.000044
AFFX-DapX-5_at
43.762745
A
0.645547
AFFX-DapX-M_at
229.6073
A
0.227636
AFFX-DapX-3_at
28.562912
A
0.978098
AFFX-LysX-5_at
96.071434
A
0.455413
AFFX-LysX-M_at
54.92448
A
0.724854
AFFX-LysX-3_at
101.2268
A
0.425962
AFFX-PheX-5_at
22.762802
A
0.971543
AFFX-PheX-M_at
28.076166
A
0.941556
AFFX-PheX-3_at
131.52124
A
0.686277
AFFX-ThrX-5_at
46.18186
A
0.559354
AFFX-ThrX-M_at
53.22649
A
0.760937
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99520.CEL.gz
3.4 Mb
(ftp) (http) CEL
