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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract20_le2
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
4475.273
P
0.002023
AFFX-BioB-M_at
8165.3784
P
0.000340
AFFX-BioB-3_at
3662.5737
P
0.005565
AFFX-BioC-5_at
12558.341
P
0.000110
AFFX-BioC-3_at
9870.126
P
0.000127
AFFX-BioDn-5_at
10152.973
P
0.000060
AFFX-BioDn-3_at
63594.355
P
0.000070
AFFX-CreX-5_at
121265.87
P
0.000044
AFFX-CreX-3_at
190353.3
P
0.000044
AFFX-DapX-5_at
349.3338
A
0.500000
AFFX-DapX-M_at
403.4096
A
0.382599
AFFX-DapX-3_at
137.53215
A
0.937071
AFFX-LysX-5_at
72.59586
A
0.588620
AFFX-LysX-M_at
389.82187
A
0.529760
AFFX-LysX-3_at
35.069164
A
0.834139
AFFX-PheX-5_at
62.806755
A
0.824672
AFFX-PheX-M_at
233.14938
A
0.772364
AFFX-PheX-3_at
115.9395
A
0.724854
AFFX-ThrX-5_at
126.31023
A
0.897835
AFFX-ThrX-M_at
117.88886
A
0.772364
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99529.CEL.gz
3.3 Mb
(ftp) (http) CEL
