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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract21_le1
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
3365.882
P
0.001102
AFFX-BioB-M_at
7083.849
P
0.000297
AFFX-BioB-3_at
1982.395
P
0.005565
AFFX-BioC-5_at
9080.602
P
0.000060
AFFX-BioC-3_at
8010.2026
P
0.000081
AFFX-BioDn-5_at
8237.049
P
0.000070
AFFX-BioDn-3_at
50857.992
P
0.000044
AFFX-CreX-5_at
83376.945
P
0.000044
AFFX-CreX-3_at
118258.13
P
0.000044
AFFX-DapX-5_at
118.68541
A
0.699394
AFFX-DapX-M_at
50.772392
A
0.631562
AFFX-DapX-3_at
53.196
A
0.941556
AFFX-LysX-5_at
244.84944
A
0.544587
AFFX-LysX-M_at
154.63684
A
0.712257
AFFX-LysX-3_at
69.74017
A
0.500000
AFFX-PheX-5_at
36.741714
A
0.897835
AFFX-PheX-M_at
40.289986
A
0.957038
AFFX-PheX-3_at
153.70567
A
0.617401
AFFX-ThrX-5_at
38.076748
A
0.963431
AFFX-ThrX-M_at
212.16597
A
0.529760
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99530.CEL.gz
3.3 Mb
(ftp) (http) CEL
