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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract21_le2
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
7501.6455
P
0.002867
AFFX-BioB-M_at
10864.461
P
0.000340
AFFX-BioB-3_at
4210.052
P
0.005565
AFFX-BioC-5_at
16334.151
P
0.000044
AFFX-BioC-3_at
13110.41
P
0.000070
AFFX-BioDn-5_at
13139.558
P
0.000446
AFFX-BioDn-3_at
78491.05
P
0.000044
AFFX-CreX-5_at
156084.77
P
0.000044
AFFX-CreX-3_at
239929.72
P
0.000044
AFFX-DapX-5_at
315.7813
A
0.603080
AFFX-DapX-M_at
806.2254
A
0.672921
AFFX-DapX-3_at
176.3475
A
0.916408
AFFX-LysX-5_at
77.77671
A
0.712257
AFFX-LysX-M_at
143.1008
A
0.904333
AFFX-LysX-3_at
107.720345
A
0.794288
AFFX-PheX-5_at
57.225933
A
0.868639
AFFX-PheX-M_at
259.56702
A
0.897835
AFFX-PheX-3_at
305.98953
A
0.794268
AFFX-ThrX-5_at
75.84195
A
0.945787
AFFX-ThrX-M_at
142.0976
A
0.904333
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99531.CEL.gz
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(ftp) (http) CEL
