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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract22_le1
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSM326668 Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
2104.5088
P
0.003595
AFFX-BioB-M_at
4103.749
P
0.000972
AFFX-BioB-3_at
1797.5029
P
0.008440
AFFX-BioC-5_at
5957.6733
P
0.000169
AFFX-BioC-3_at
4671.482
P
0.000070
AFFX-BioDn-5_at
5002.3022
P
0.000070
AFFX-BioDn-3_at
36811.207
P
0.000095
AFFX-CreX-5_at
53703.297
P
0.000044
AFFX-CreX-3_at
75708.734
P
0.000044
AFFX-DapX-5_at
332.88593
A
0.396920
AFFX-DapX-M_at
198.10242
A
0.340661
AFFX-DapX-3_at
83.689285
A
0.904333
AFFX-LysX-5_at
93.324005
A
0.631562
AFFX-LysX-M_at
89.384605
A
0.804734
AFFX-LysX-3_at
355.00974
A
0.147939
AFFX-PheX-5_at
38.300545
A
0.814869
AFFX-PheX-M_at
52.49626
A
0.737173
AFFX-PheX-3_at
97.45042
A
0.772364
AFFX-ThrX-5_at
40.02247
A
0.910522
AFFX-ThrX-M_at
92.00444
A
0.574038
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99532.CEL.gz
3.4 Mb
(ftp) (http) CEL
