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Sample GSM99536 Query DataSets for GSM99536
Status Public on Mar 08, 2006
Title brain, Left frontal Lobe: Extract24_le1
Sample type RNA
 
Source name brain, Left frontal Lobe
Organism Homo sapiens
Characteristics tissue: brain, Left frontal Lobe
histology: GBM
tumor number (as appears in figure 3): 938
age: 29
gender: MALE
grade: 4
living: DECEASED
survival time: 569
survival cluster: SC1
hc_74_samples: HC1B
hc_85_samples: HC1B
array: 133A
Extracted molecule total RNA
Extraction protocol RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
 
Hybridization protocol Standard Affymetrix protocols were used.
Scan protocol Standard Affymetrix protocols were used.
Description GBM
Treatment, type=remove
 
Submission date Mar 08, 2006
Last update date Sep 11, 2014
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL96
Series (1)
GSE4412 freij-affy-human-91666
Relations
Reanalyzed by GSM326676
Reanalyzed by GSE61335

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1661.3315 P 0.005565
AFFX-BioB-M_at 3489.1282 P 0.002023
AFFX-BioB-3_at 1340.3086 P 0.039661
AFFX-BioC-5_at 5242.1665 P 0.000169
AFFX-BioC-3_at 3662.163 P 0.000081
AFFX-BioDn-5_at 3503.8606 P 0.000258
AFFX-BioDn-3_at 29924.252 P 0.000070
AFFX-CreX-5_at 40512.523 P 0.000044
AFFX-CreX-3_at 54758.004 P 0.000044
AFFX-DapX-5_at 299.53714 A 0.340661
AFFX-DapX-M_at 243.13162 A 0.544587
AFFX-DapX-3_at 95.64198 A 0.860518
AFFX-LysX-5_at 51.991432 A 0.927300
AFFX-LysX-M_at 89.60406 A 0.772364
AFFX-LysX-3_at 143.40726 A 0.645547
AFFX-PheX-5_at 26.205606 A 0.969024
AFFX-PheX-M_at 31.752167 A 0.991560
AFFX-PheX-3_at 123.776535 A 0.860518
AFFX-ThrX-5_at 105.81058 A 0.737173
AFFX-ThrX-M_at 173.7658 A 0.712257

Total number of rows: 22283

Table truncated, full table size 687 Kbytes.




Supplementary file Size Download File type/resource
GSM99536.CEL.gz 3.4 Mb (ftp)(http) CEL

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