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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract25_le1
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens
Characteristics
tissue: brain, Left frontal Lobe histology: GBM tumor number (as appears in figure 3): 2067 age: 42 gender: FEMALE grade: 4 living: DECEASED survival time: 168 survival cluster: SC2 hc_85_samples: HC2A array: 133A
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM Treatment, type=remove
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org
Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96
Series (1)
Relations
Reanalyzed by
GSE61335
Data table header descriptions
ID_REF
The name of the probe set, blank for control probes
VALUE
The signal value calculated by MAS 5 or GCOS software.
ABS_CALL
The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE
The detection p-value calculated by the MAS 5 or GCOS software
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
1508.0231
P
0.010317
AFFX-BioB-M_at
2972.0706
P
0.000446
AFFX-BioB-3_at
1446.5815
P
0.018281
AFFX-BioC-5_at
4635.1147
P
0.000147
AFFX-BioC-3_at
3350.5151
P
0.000070
AFFX-BioDn-5_at
3534.5745
P
0.000147
AFFX-BioDn-3_at
28214.57
P
0.000081
AFFX-CreX-5_at
38014.41
P
0.000044
AFFX-CreX-3_at
56455.965
P
0.000044
AFFX-DapX-5_at
343.39105
A
0.156732
AFFX-DapX-M_at
370.84903
A
0.216524
AFFX-DapX-3_at
65.91322
A
0.883887
AFFX-LysX-5_at
22.473934
A
0.921998
AFFX-LysX-M_at
260.42596
A
0.514890
AFFX-LysX-3_at
136.35738
A
0.574038
AFFX-PheX-5_at
32.0642
A
0.957038
AFFX-PheX-M_at
40.07294
A
0.960339
AFFX-PheX-3_at
116.58566
A
0.686277
AFFX-ThrX-5_at
81.308945
A
0.804734
AFFX-ThrX-M_at
142.4204
A
0.737173
Total number of rows: 22283 Table truncated, full table size 687 Kbytes .Supplementary file
Size
Download
File type/resource
GSM99538.CEL.gz
3.4 Mb
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CEL