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Status
Public on Mar 08, 2006
Title
brain, Left frontal Lobe: Extract29_le1
Sample type
RNA
Source name
brain, Left frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSM326685 Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1640.0383
P
0.015183
AFFX-BioB-M_at
2282.9873
P
0.000581
AFFX-BioB-3_at
1624.0295
P
0.001410
AFFX-BioC-5_at
5295.392
P
0.000169
AFFX-BioC-3_at
3923.066
P
0.000095
AFFX-BioDn-5_at
4147.1323
P
0.000754
AFFX-BioDn-3_at
26203.275
P
0.000169
AFFX-CreX-5_at
35050.992
P
0.000044
AFFX-CreX-3_at
73877.66
P
0.000044
AFFX-DapX-5_at
163.15869
A
0.514890
AFFX-DapX-M_at
363.26602
A
0.123572
AFFX-DapX-3_at
123.24842
A
0.737173
AFFX-LysX-5_at
129.24797
A
0.672921
AFFX-LysX-M_at
48.429447
A
0.891021
AFFX-LysX-3_at
163.82822
A
0.470241
AFFX-PheX-5_at
15.847802
A
0.966323
AFFX-PheX-M_at
48.45113
A
0.932322
AFFX-PheX-3_at
439.37054
A
0.382599
AFFX-ThrX-5_at
129.74577
A
0.724854
AFFX-ThrX-M_at
115.816345
A
0.824672
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99546.CEL.gz
3.3 Mb
(ftp) (http) CEL
