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Sample GSM99552 Query DataSets for GSM99552
Status Public on Mar 08, 2006
Title brain, Left frontal Lobe: Extract32_le1
Sample type RNA
 
Source name brain, Left frontal Lobe
Organism Homo sapiens
Characteristics tissue: brain, Left frontal Lobe
histology: GBM
tumor number (as appears in figure 3): 1478
age: 40
gender: MALE
grade: 4
living: ALIVE
survival time: 1088
survival cluster: SC1
hc_74_samples: HC1A
hc_85_samples: HC1A
array: 133A
Extracted molecule total RNA
Extraction protocol RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
 
Hybridization protocol Standard Affymetrix protocols were used.
Scan protocol Standard Affymetrix protocols were used.
Description GBM
Treatment, type=remove
 
Submission date Mar 08, 2006
Last update date Sep 11, 2014
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL96
Series (1)
GSE4412 freij-affy-human-91666
Relations
Reanalyzed by GSM326665
Reanalyzed by GSE61335

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1506.6774 P 0.001102
AFFX-BioB-M_at 2694.8406 P 0.000225
AFFX-BioB-3_at 1580.3561 P 0.003595
AFFX-BioC-5_at 5396.7617 P 0.000169
AFFX-BioC-3_at 3738.2754 P 0.000095
AFFX-BioDn-5_at 3436.465 P 0.000095
AFFX-BioDn-3_at 22640.56 P 0.000169
AFFX-CreX-5_at 35528.13 P 0.000044
AFFX-CreX-3_at 54954.297 P 0.000044
AFFX-DapX-5_at 51.64568 A 0.529760
AFFX-DapX-M_at 179.82208 A 0.227636
AFFX-DapX-3_at 39.75018 A 0.960339
AFFX-LysX-5_at 50.75023 A 0.455413
AFFX-LysX-M_at 135.78406 A 0.724854
AFFX-LysX-3_at 54.107925 A 0.440646
AFFX-PheX-5_at 25.835712 A 0.883887
AFFX-PheX-M_at 24.055714 A 0.945787
AFFX-PheX-3_at 114.47988 A 0.500000
AFFX-ThrX-5_at 59.05083 A 0.603080
AFFX-ThrX-M_at 151.8733 A 0.514890

Total number of rows: 22283

Table truncated, full table size 687 Kbytes.




Supplementary file Size Download File type/resource
GSM99552.CEL.gz 3.5 Mb (ftp)(http) CEL

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