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Sample GSM99553 Query DataSets for GSM99553
Status Public on Mar 08, 2006
Title brain, Left frontal Lobe: Extract32_le2
Sample type RNA
 
Source name brain, Left frontal Lobe
Organism Homo sapiens
Characteristics tissue: brain, Left frontal Lobe
histology: GBM
tumor number (as appears in figure 3): 1478
age: 40
gender: MALE
grade: 4
living: ALIVE
survival time: 1088
survival cluster: SC1
hc_74_samples: HC1A
hc_85_samples: HC1A
array: 133B
Extracted molecule total RNA
Extraction protocol RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
 
Hybridization protocol Standard Affymetrix protocols were used.
Scan protocol Standard Affymetrix protocols were used.
Description GBM
Treatment, type=remove
 
Submission date Mar 08, 2006
Last update date Sep 11, 2014
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL97
Series (1)
GSE4412 freij-affy-human-91666
Relations
Reanalyzed by GSE61335

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 4751.8364 P 0.005565
AFFX-BioB-M_at 9745.1875 P 0.000195
AFFX-BioB-3_at 3226.046 P 0.013811
AFFX-BioC-5_at 10586.176 P 0.000147
AFFX-BioC-3_at 8964.24 P 0.000070
AFFX-BioDn-5_at 6262.5864 P 0.000446
AFFX-BioDn-3_at 52306.77 P 0.000169
AFFX-CreX-5_at 85439.63 P 0.000044
AFFX-CreX-3_at 132143.8 P 0.000044
AFFX-DapX-5_at 478.3502 A 0.239063
AFFX-DapX-M_at 439.85373 A 0.559354
AFFX-DapX-3_at 74.66302 A 0.966323
AFFX-LysX-5_at 513.0322 A 0.156732
AFFX-LysX-M_at 140.9805 A 0.686277
AFFX-LysX-3_at 529.37506 A 0.300606
AFFX-PheX-5_at 50.267776 A 0.927300
AFFX-PheX-M_at 58.947334 A 0.983330
AFFX-PheX-3_at 305.92947 A 0.749204
AFFX-ThrX-5_at 135.09271 A 0.724854
AFFX-ThrX-M_at 125.50746 A 0.500000

Total number of rows: 22645

Table truncated, full table size 686 Kbytes.




Supplementary file Size Download File type/resource
GSM99553.CEL.gz 3.3 Mb (ftp)(http) CEL

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