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Sample GSM99565

Query DataSets for GSM99565

Status

Public on Mar 08, 2006

Title

brain, left frontal temporal lobe: Extract38_le2

Sample type

RNA

Source name

brain, left frontal temporal lobe

Organism

Homo sapiens

Characteristics

tissue: brain, left frontal temporal lobe
histology: GBM
tumor number (as appears in figure 3): 1675
age: 61
gender: MALE
grade: 4
living: DECEASED
survival time: 683
survival cluster: SC2
hc_74_samples: HC2B
hc_85_samples: HC2B
array: 133B

Extracted molecule

total RNA

Extraction protocol

RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).

Label protocol

Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).

Hybridization protocol

Standard Affymetrix protocols were used.

Scan protocol

Standard Affymetrix protocols were used.

Description

GBM
Treatment, type=remove

Submission date

Mar 08, 2006

Last update date

Sep 11, 2014

Contact name

Winnie Liang

E-mail(s)

wliang@tgen.org

Organization name

Translational Genomics

Street address

445 N. Fifth Street

City

Phoenix

State/province

ZIP/Postal code

85012

Country

USA

Platform ID

GPL97

Series (1)

GSE4412

freij-affy-human-91666

Relations

Reanalyzed by

GSE61335

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS 5 or GCOS software.
ABS_CALL	The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE	The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	3176.315	P	0.002867
AFFX-BioB-M_at	8396.677	P	0.000195
AFFX-BioB-3_at	4080.7256	P	0.001593
AFFX-BioC-5_at	9075.362	P	0.000110
AFFX-BioC-3_at	7316.22	P	0.000169
AFFX-BioDn-5_at	7784.398	P	0.000195
AFFX-BioDn-3_at	39943.65	P	0.000225
AFFX-CreX-5_at	74842.34	P	0.000044
AFFX-CreX-3_at	121234.945	P	0.000044
AFFX-DapX-5_at	395.9755	A	0.195266
AFFX-DapX-M_at	517.4685	A	0.300606
AFFX-DapX-3_at	74.35266	A	0.983330
AFFX-LysX-5_at	321.5879	A	0.195266
AFFX-LysX-M_at	401.4991	A	0.382599
AFFX-LysX-3_at	59.90861	A	0.617401
AFFX-PheX-5_at	45.178944	A	0.957038
AFFX-PheX-M_at	124.45982	A	0.804734
AFFX-PheX-3_at	290.22183	A	0.645547
AFFX-ThrX-5_at	117.34939	A	0.760937
AFFX-ThrX-M_at	447.32687	A	0.396920

Total number of rows: 22645

Table truncated, full table size 686 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM99565.CEL.gz	3.3 Mb	(ftp)(http)	CEL