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Status
Public on Mar 08, 2006
Title
brain, Left Parietal Lobe: Extract40_le1
Sample type
RNA
Source name
brain, Left Parietal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left Parietal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1185.4469
P
0.002867
AFFX-BioB-M_at
2973.986
P
0.000052
AFFX-BioB-3_at
1051.8025
P
0.000754
AFFX-BioC-5_at
3407.3726
P
0.000169
AFFX-BioC-3_at
2949.2131
P
0.000095
AFFX-BioDn-5_at
2900.2922
P
0.000052
AFFX-BioDn-3_at
19493.52
P
0.000169
AFFX-CreX-5_at
25010.266
P
0.000044
AFFX-CreX-3_at
37600.887
P
0.000044
AFFX-DapX-5_at
49.855713
A
0.368438
AFFX-DapX-M_at
91.73211
A
0.749204
AFFX-DapX-3_at
27.219734
A
0.941556
AFFX-LysX-5_at
149.46136
A
0.116113
AFFX-LysX-M_at
29.672482
A
0.712257
AFFX-LysX-3_at
15.187614
A
0.772364
AFFX-PheX-5_at
11.7496395
A
0.876428
AFFX-PheX-M_at
11.891149
A
0.960339
AFFX-PheX-3_at
99.00209
A
0.699394
AFFX-ThrX-5_at
51.755234
A
0.772364
AFFX-ThrX-M_at
55.268837
A
0.574038
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99568.CEL.gz
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