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Status
Public on Mar 08, 2006
Title
brain, Left Parietal Lobe: Extract40_le2
Sample type
RNA
Source name
brain, Left Parietal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left Parietal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
3417.9128
P
0.002023
AFFX-BioB-M_at
4434.718
P
0.000044
AFFX-BioB-3_at
2640.596
P
0.003212
AFFX-BioC-5_at
7436.0596
P
0.000110
AFFX-BioC-3_at
6988.7065
P
0.000095
AFFX-BioDn-5_at
5933.2627
P
0.000052
AFFX-BioDn-3_at
44552.516
P
0.000195
AFFX-CreX-5_at
62139.363
P
0.000044
AFFX-CreX-3_at
105736.09
P
0.000044
AFFX-DapX-5_at
335.47586
A
0.216524
AFFX-DapX-M_at
494.386
A
0.165861
AFFX-DapX-3_at
66.79447
A
0.921998
AFFX-LysX-5_at
88.5683
A
0.559354
AFFX-LysX-M_at
543.3592
A
0.544587
AFFX-LysX-3_at
81.64175
A
0.544587
AFFX-PheX-5_at
23.321371
A
0.960339
AFFX-PheX-M_at
72.64182
A
0.953518
AFFX-PheX-3_at
194.71532
A
0.724854
AFFX-ThrX-5_at
110.03299
A
0.699394
AFFX-ThrX-M_at
104.4565
A
0.645547
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99569.CEL.gz
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