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Status
Public on Mar 08, 2006
Title
brain, Left Parietal Lobe: Extract41_le1
Sample type
RNA
Source name
brain, Left Parietal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left Parietal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1602.5743
P
0.008440
AFFX-BioB-M_at
4143.4097
P
0.000754
AFFX-BioB-3_at
1603.6436
P
0.004484
AFFX-BioC-5_at
4963.5513
P
0.000225
AFFX-BioC-3_at
3687.738
P
0.000095
AFFX-BioDn-5_at
3764.9133
P
0.000081
AFFX-BioDn-3_at
27666.762
P
0.000147
AFFX-CreX-5_at
40257.676
P
0.000044
AFFX-CreX-3_at
63472.508
P
0.000044
AFFX-DapX-5_at
29.89337
A
0.686277
AFFX-DapX-M_at
130.32884
A
0.440646
AFFX-DapX-3_at
26.020111
A
0.932322
AFFX-LysX-5_at
117.128334
A
0.396920
AFFX-LysX-M_at
239.12206
A
0.574038
AFFX-LysX-3_at
48.056183
A
0.485110
AFFX-PheX-5_at
11.926677
A
0.927300
AFFX-PheX-M_at
95.38491
A
0.814869
AFFX-PheX-3_at
91.78534
A
0.617401
AFFX-ThrX-5_at
47.249474
A
0.588620
AFFX-ThrX-M_at
177.03539
A
0.411380
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99570.CEL.gz
3.5 Mb
(ftp) (http) CEL
