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Sample GSM99573 Query DataSets for GSM99573
Status Public on Mar 08, 2006
Title brain, Left Parietal Occipital: Extract43_le2
Sample type RNA
 
Source name brain, Left Parietal Occipital
Organism Homo sapiens
Characteristics tissue: brain, Left Parietal Occipital
histology: GBM
tumor number (as appears in figure 3): 604
age: 66
gender: MALE
grade: 4
living: DECEASED
survival time: 185
survival cluster: SC2
hc_74_samples: HC2B
hc_85_samples: HC2B
array: 133B
Extracted molecule total RNA
Extraction protocol RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
 
Hybridization protocol Standard Affymetrix protocols were used.
Scan protocol Standard Affymetrix protocols were used.
Description GBM
Treatment, type=remove
 
Submission date Mar 08, 2006
Last update date Sep 11, 2014
Contact name Winnie Liang
E-mail(s) wliang@tgen.org
Organization name Translational Genomics
Street address 445 N. Fifth Street
City Phoenix
State/province AZ
ZIP/Postal code 85012
Country USA
 
Platform ID GPL97
Series (1)
GSE4412 freij-affy-human-91666
Relations
Reanalyzed by GSE61335

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 4279.795 P 0.012547
AFFX-BioB-M_at 6821.985 P 0.002023
AFFX-BioB-3_at 2040.4497 A 0.095667
AFFX-BioC-5_at 10967.537 P 0.000258
AFFX-BioC-3_at 7285.559 P 0.000509
AFFX-BioDn-5_at 8793.095 P 0.001410
AFFX-BioDn-3_at 71567.46 P 0.000258
AFFX-CreX-5_at 75648.195 P 0.000044
AFFX-CreX-3_at 137341.73 P 0.000052
AFFX-DapX-5_at 426.17667 A 0.262827
AFFX-DapX-M_at 832.686 A 0.327079
AFFX-DapX-3_at 174.56482 A 0.749204
AFFX-LysX-5_at 653.0524 A 0.287743
AFFX-LysX-M_at 868.84283 A 0.396920
AFFX-LysX-3_at 225.16708 A 0.440646
AFFX-PheX-5_at 53.436077 A 0.904333
AFFX-PheX-M_at 92.25145 A 0.960339
AFFX-PheX-3_at 949.86975 A 0.354453
AFFX-ThrX-5_at 102.07772 A 0.927300
AFFX-ThrX-M_at 141.24916 A 0.834139

Total number of rows: 22645

Table truncated, full table size 686 Kbytes.




Supplementary file Size Download File type/resource
GSM99573.CEL.gz 3.4 Mb (ftp)(http) CEL

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