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Status
Public on Mar 08, 2006
Title
brain, Left Temporal Lobe: Extract45_le1
Sample type
RNA
Source name
brain, Left Temporal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left Temporal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
2481.1143
P
0.002556
AFFX-BioB-M_at
6293.991
P
0.000044
AFFX-BioB-3_at
2630.6526
P
0.001248
AFFX-BioC-5_at
8149.369
P
0.000110
AFFX-BioC-3_at
6758.63
P
0.000052
AFFX-BioDn-5_at
9719.465
P
0.000052
AFFX-BioDn-3_at
45206.242
P
0.000070
AFFX-CreX-5_at
79776.38
P
0.000044
AFFX-CreX-3_at
118009.7
P
0.000044
AFFX-DapX-5_at
167.2948
A
0.440646
AFFX-DapX-M_at
413.0384
A
0.287743
AFFX-DapX-3_at
41.91493
A
0.963431
AFFX-LysX-5_at
17.655294
A
0.932322
AFFX-LysX-M_at
61.38733
A
0.860518
AFFX-LysX-3_at
193.69771
A
0.382599
AFFX-PheX-5_at
18.785534
A
0.932322
AFFX-PheX-M_at
38.717796
A
0.941556
AFFX-PheX-3_at
310.17368
A
0.631562
AFFX-ThrX-5_at
60.417625
A
0.772364
AFFX-ThrX-M_at
39.480804
A
0.876428
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99576.CEL.gz
3.4 Mb
(ftp) (http) CEL
