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Sample GSM99578

Query DataSets for GSM99578

Status

Public on Mar 08, 2006

Title

brain, Left Temporal Lobe: Extract46_le1

Sample type

RNA

Source name

brain, Left Temporal Lobe

Organism

Homo sapiens

Characteristics

tissue: brain, Left Temporal Lobe
histology: GBM
tumor number (as appears in figure 3): 2017
age: 60
gender: MALE
grade: 4
living: DECEASED
survival time: 237
survival cluster: SC2
hc_74_samples: HC2B
hc_85_samples: HC2B
array: 133A

Extracted molecule

total RNA

Extraction protocol

RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).

Label protocol

Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).

Hybridization protocol

Standard Affymetrix protocols were used.

Scan protocol

Standard Affymetrix protocols were used.

Description

GBM
Treatment, type=remove

Submission date

Mar 08, 2006

Last update date

Sep 11, 2014

Contact name

Winnie Liang

E-mail(s)

wliang@tgen.org

Organization name

Translational Genomics

Street address

445 N. Fifth Street

City

Phoenix

State/province

ZIP/Postal code

85012

Country

USA

Platform ID

GPL96

Series (1)

GSE4412

freij-affy-human-91666

Relations

Reanalyzed by

GSM326700

Reanalyzed by

GSE61335

Data table header descriptions
ID_REF	The name of the probe set, blank for control probes
VALUE	The signal value calculated by MAS 5 or GCOS software.
ABS_CALL	The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE	The detection p-value calculated by the MAS 5 or GCOS software

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	1015.87756	P	0.002556
AFFX-BioB-M_at	2550.1619	P	0.000509
AFFX-BioB-3_at	900.0793	P	0.007620
AFFX-BioC-5_at	3592.688	P	0.000095
AFFX-BioC-3_at	2924.041	P	0.000060
AFFX-BioDn-5_at	3119.428	P	0.000052
AFFX-BioDn-3_at	21892.436	P	0.000081
AFFX-CreX-5_at	32437.268	P	0.000044
AFFX-CreX-3_at	47919.723	P	0.000044
AFFX-DapX-5_at	125.30328	A	0.250796
AFFX-DapX-M_at	80.86421	A	0.470241
AFFX-DapX-3_at	15.260946	A	0.988616
AFFX-LysX-5_at	91.76833	A	0.425962
AFFX-LysX-M_at	26.721327	A	0.804734
AFFX-LysX-3_at	34.650898	A	0.588620
AFFX-PheX-5_at	12.301255	A	0.960339
AFFX-PheX-M_at	17.872162	A	0.904333
AFFX-PheX-3_at	87.06241	A	0.645547
AFFX-ThrX-5_at	19.540918	A	0.772364
AFFX-ThrX-M_at	119.30275	A	0.500000

Total number of rows: 22283

Table truncated, full table size 687 Kbytes.

Supplementary file	Size	Download	File type/resource
GSM99578.CEL.gz	3.4 Mb	(ftp)(http)	CEL