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Status
Public on Mar 08, 2006
Title
brain, Left Temporal Lobe: Extract47_le1
Sample type
RNA
Source name
brain, Left Temporal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Left Temporal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Relations Reanalyzed by
GSM326661 Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1675.2507
P
0.001593
AFFX-BioB-M_at
3186.02
P
0.000225
AFFX-BioB-3_at
1546.6926
P
0.000390
AFFX-BioC-5_at
5150.8394
P
0.000147
AFFX-BioC-3_at
4181.934
P
0.000060
AFFX-BioDn-5_at
3656.2112
P
0.000060
AFFX-BioDn-3_at
24683.75
P
0.000147
AFFX-CreX-5_at
40455.766
P
0.000044
AFFX-CreX-3_at
57367.875
P
0.000044
AFFX-DapX-5_at
79.45534
A
0.500000
AFFX-DapX-M_at
189.62418
A
0.275146
AFFX-DapX-3_at
39.743465
A
0.891021
AFFX-LysX-5_at
6.425255
A
0.783476
AFFX-LysX-M_at
52.888645
A
0.724854
AFFX-LysX-3_at
26.225859
A
0.760937
AFFX-PheX-5_at
16.880398
A
0.868639
AFFX-PheX-M_at
10.949987
A
0.937071
AFFX-PheX-3_at
197.27544
A
0.485110
AFFX-ThrX-5_at
29.413084
A
0.804734
AFFX-ThrX-M_at
68.79741
A
0.559354
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99580.CEL.gz
3.5 Mb
(ftp) (http) CEL
