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Status
Public on Mar 08, 2006
Title
brain, Left Temporal Parietal: Extract50_le2
Sample type
RNA
Source name
brain, Left Temporal Parietal
Organism
Homo sapiens Characteristics
tissue: brain, Left Temporal Parietal
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
7323.867
P
0.001248
AFFX-BioB-M_at
8330.02
P
0.000509
AFFX-BioB-3_at
3908.1265
P
0.016670
AFFX-BioC-5_at
15825.067
P
0.000095
AFFX-BioC-3_at
12710.273
P
0.000110
AFFX-BioDn-5_at
10465.706
P
0.000169
AFFX-BioDn-3_at
97626.17
P
0.000127
AFFX-CreX-5_at
124476.4
P
0.000044
AFFX-CreX-3_at
205943.81
P
0.000044
AFFX-DapX-5_at
397.84317
A
0.588620
AFFX-DapX-M_at
472.5178
A
0.588620
AFFX-DapX-3_at
110.0402
A
0.979978
AFFX-LysX-5_at
478.5212
A
0.327079
AFFX-LysX-M_at
162.89854
A
0.749204
AFFX-LysX-3_at
305.20065
A
0.287743
AFFX-PheX-5_at
39.494133
A
0.860518
AFFX-PheX-M_at
75.27382
A
0.910541
AFFX-PheX-3_at
882.8951
A
0.574038
AFFX-ThrX-5_at
194.7563
A
0.737173
AFFX-ThrX-M_at
441.9808
A
0.455413
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99587.CEL.gz
3.3 Mb
(ftp) (http) CEL
