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Status
Public on Mar 08, 2006
Title
brain, Right Anterior Temporal: Extract52_le2
Sample type
RNA
Source name
brain, Right Anterior Temporal
Organism
Homo sapiens Characteristics
tissue: brain, Right Anterior Temporal
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
Sep 11, 2014
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL97 Series (1)
Relations Reanalyzed by
GSE61335
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
4414.5864
P
0.000754
AFFX-BioB-M_at
12617.485
P
0.000147
AFFX-BioB-3_at
4953.3286
P
0.000258
AFFX-BioC-5_at
13326.916
P
0.000081
AFFX-BioC-3_at
11545.581
P
0.000095
AFFX-BioDn-5_at
12109.172
P
0.000060
AFFX-BioDn-3_at
77956.664
P
0.000081
AFFX-CreX-5_at
139559.08
P
0.000044
AFFX-CreX-3_at
212603.48
P
0.000044
AFFX-DapX-5_at
386.03015
A
0.227636
AFFX-DapX-M_at
569.2773
A
0.239063
AFFX-DapX-3_at
76.717766
A
0.969024
AFFX-LysX-5_at
47.17862
A
0.876428
AFFX-LysX-M_at
274.16464
A
0.645547
AFFX-LysX-3_at
127.64383
A
0.470241
AFFX-PheX-5_at
37.49972
A
0.953518
AFFX-PheX-M_at
75.96431
A
0.932322
AFFX-PheX-3_at
365.33685
A
0.485110
AFFX-ThrX-5_at
377.1696
A
0.617401
AFFX-ThrX-M_at
89.5931
A
0.645547
22645 686 Kbytes .Supplementary file Size Download File type/resource GSM99591.CEL.gz
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(ftp) (http) CEL
