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Status
Public on Mar 08, 2006
Title
brain, Right Frontal Lobe: Extract55_le1
Sample type
RNA
Source name
brain, Right Frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
3414.8516
P
0.000581
AFFX-BioB-M_at
6251.266
P
0.000044
AFFX-BioB-3_at
3118.6304
P
0.000225
AFFX-BioC-5_at
7648.9927
P
0.000070
AFFX-BioC-3_at
8135.454
P
0.000060
AFFX-BioDn-5_at
9008.864
P
0.000044
AFFX-BioDn-3_at
40329.605
P
0.000052
AFFX-CreX-5_at
58508.586
P
0.000044
AFFX-CreX-3_at
84109.0
P
0.000044
AFFX-DapX-5_at
192.51797
A
0.195266
AFFX-DapX-M_at
119.12794
A
0.313723
AFFX-DapX-3_at
26.752563
A
0.945787
AFFX-LysX-5_at
67.56032
A
0.559354
AFFX-LysX-M_at
128.19109
A
0.617401
AFFX-LysX-3_at
57.77623
A
0.368438
AFFX-PheX-5_at
17.309994
A
0.868639
AFFX-PheX-M_at
29.082447
A
0.916408
AFFX-PheX-3_at
199.65115
A
0.368438
AFFX-ThrX-5_at
39.80559
A
0.760937
AFFX-ThrX-M_at
145.30011
A
0.470241
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99596.CEL.gz
3.4 Mb
(ftp) (http) CEL
