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Status
Public on Mar 08, 2006
Title
brain, Right Frontal Lobe: Extract57_le1
Sample type
RNA
Source name
brain, Right Frontal Lobe
Organism
Homo sapiens Characteristics
tissue: brain, Right Frontal Lobe
Extracted molecule
total RNA
Extraction protocol
RNA extraction was performed as described previously (Mischel PS, Shai R, Shi T, et al Identification of molecular subtypes of glioblastoma by gene expression profiling. Oncogene, 2003;22:2361-73) and analyzed on both a spectrophotometer and Agilent 2100 Bioanalyzer (Agilent Technologies, Palo Alto, CA).
Label protocol
Probes were prepared using standard Affymetrix protocols and hybridized to Affymetrix HG-U133A and HG-U133B arrays (Affymetrix, Santa Clara, CA).
Hybridization protocol
Standard Affymetrix protocols were used.
Scan protocol
Standard Affymetrix protocols were used.
Description
GBM
Submission date
Mar 08, 2006
Last update date
May 22, 2013
Contact name
Winnie Liang
E-mail(s)
wliang@tgen.org Organization name
Translational Genomics
Street address
445 N. Fifth Street
City
Phoenix
State/province
AZ
ZIP/Postal code
85012
Country
USA
Platform ID
GPL96 Series (1)
Data table header descriptions ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS 5 or GCOS software.
ABS_CALL The detection value calculated by the MAS 5 or GCOS software
DETECTION P-VALUE The detection p-value calculated by the MAS 5 or GCOS software
Data table ID_REF VALUE ABS_CALL DETECTION P-VALUE AFFX-BioB-5_at
1904.0923
P
0.002275
AFFX-BioB-M_at
2493.8474
P
0.000052
AFFX-BioB-3_at
1053.8617
P
0.001102
AFFX-BioC-5_at
4242.126
P
0.000147
AFFX-BioC-3_at
3178.3787
P
0.000169
AFFX-BioDn-5_at
3044.3313
P
0.000044
AFFX-BioDn-3_at
22485.14
P
0.000169
AFFX-CreX-5_at
26220.955
P
0.000044
AFFX-CreX-3_at
42390.137
P
0.000044
AFFX-DapX-5_at
18.698395
A
0.824672
AFFX-DapX-M_at
98.055824
A
0.485110
AFFX-DapX-3_at
30.394041
A
0.814869
AFFX-LysX-5_at
36.78707
A
0.699394
AFFX-LysX-M_at
124.58846
A
0.617401
AFFX-LysX-3_at
34.425304
A
0.645547
AFFX-PheX-5_at
18.006075
A
0.897835
AFFX-PheX-M_at
18.12325
A
0.927300
AFFX-PheX-3_at
246.90652
A
0.368438
AFFX-ThrX-5_at
47.779232
A
0.686277
AFFX-ThrX-M_at
14.595851
A
0.891021
22283 687 Kbytes .Supplementary file Size Download File type/resource GSM99600.CEL.gz
3.4 Mb
(ftp) (http) CEL
