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Sample GSM998505 Query DataSets for GSM998505
Status Public on Sep 01, 2013
Title lqz159 Intestine_P1pos_1
Sample type RNA
 
Source name INTESTINE
Organism Mus musculus
Characteristics tissue: INTESTINE
prom1 status: POS
strain: C57BL/6
disease state: normal
Growth protocol A small chuck of normal or tumor tissue was collected and frozen on dry ice immediately after animal was euthanized. For Prom1+ and Prom1- cells isolation, tissues were dissociated into single cells and sorted using anti-Prom1 MicroBeads (Miltenyi Biotec).
Extracted molecule total RNA
Extraction protocol Total mRNA was extracted from frozen tissues or sorted Prom1+ and Prom1- cells using PicoPureTM extraction kit (Arcturus).
Label Biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description normal
Data processing The data were analyzed with RMA as implemented in Partek Genomics Suite 6.6
 
Submission date Sep 05, 2012
Last update date Sep 01, 2013
Contact name David Finkelstein
E-mail(s) david.finkelstein@stjude.org
Phone 9014953931
Organization name St Jude Children's Research Hospital
Department Computational Biology
Street address 332 N. Lauderdale St.
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL11180
Series (1)
GSE40634 Cancers originate preferentially in adult tissue stem cells

Data table header descriptions
ID_REF
VALUE RMA defined log2 signal

Data table
ID_REF VALUE
1415670_PM_at 9.45602
1415671_PM_at 9.06728
1415672_PM_at 8.94369
1415673_PM_at 6.5011
1415674_PM_a_at 8.73363
1415675_PM_at 7.56674
1415676_PM_a_at 9.65901
1415677_PM_at 10.6304
1415678_PM_at 9.68015
1415679_PM_at 10.6501
1415680_PM_at 8.67298
1415681_PM_at 9.44508
1415682_PM_at 7.12161
1415683_PM_at 9.96943
1415684_PM_at 7.8527
1415685_PM_at 7.91492
1415686_PM_at 8.60994
1415687_PM_a_at 9.60929
1415688_PM_at 8.88416
1415689_PM_s_at 8.03594

Total number of rows: 45141

Table truncated, full table size 983 Kbytes.




Supplementary file Size Download File type/resource
GSM998505_lqz159-htmg430pm.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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