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Sample GSM998546 Query DataSets for GSM998546
Status Public on Sep 01, 2013
Title lqz332 Stomach_P1pos_3
Sample type RNA
 
Source name STOMACH
Organism Mus musculus
Characteristics tissue: STOMACH
prom1 status: POS
strain: C57BL/6
disease state: normal
Growth protocol A small chuck of normal or tumor tissue was collected and frozen on dry ice immediately after animal was euthanized. For Prom1+ and Prom1- cells isolation, tissues were dissociated into single cells and sorted using anti-Prom1 MicroBeads (Miltenyi Biotec).
Extracted molecule total RNA
Extraction protocol Total mRNA was extracted from frozen tissues or sorted Prom1+ and Prom1- cells using PicoPureTM extraction kit (Arcturus).
Label Biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol standard Affymetrix protocol
Description normal
Data processing The data were analyzed with RMA as implemented in Partek Genomics Suite 6.6
 
Submission date Sep 05, 2012
Last update date Sep 01, 2013
Contact name David Finkelstein
E-mail(s) david.finkelstein@stjude.org
Phone 9014953931
Organization name St Jude Children's Research Hospital
Department Computational Biology
Street address 332 N. Lauderdale St.
City Memphis
State/province TN
ZIP/Postal code 38105
Country USA
 
Platform ID GPL11180
Series (1)
GSE40634 Cancers originate preferentially in adult tissue stem cells

Data table header descriptions
ID_REF
VALUE RMA defined log2 signal

Data table
ID_REF VALUE
1415670_PM_at 8.79958
1415671_PM_at 8.69275
1415672_PM_at 9.53026
1415673_PM_at 6.34776
1415674_PM_a_at 8.12693
1415675_PM_at 8.40036
1415676_PM_a_at 9.66625
1415677_PM_at 8.02975
1415678_PM_at 8.83851
1415679_PM_at 10.519
1415680_PM_at 8.20587
1415681_PM_at 9.04333
1415682_PM_at 6.31222
1415683_PM_at 9.60639
1415684_PM_at 6.80454
1415685_PM_at 6.9531
1415686_PM_at 8.0887
1415687_PM_a_at 9.85922
1415688_PM_at 9.34282
1415689_PM_s_at 7.40955

Total number of rows: 45141

Table truncated, full table size 982 Kbytes.




Supplementary file Size Download File type/resource
GSM998546_lqz332-htmg430pm.CEL.gz 1.8 Mb (ftp)(http) CEL
Processed data included within Sample table

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