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    2810459M11Rik RIKEN cDNA 2810459M11 gene [ Mus musculus (house mouse) ]

    Gene ID: 72792, updated on 5-Mar-2024

    Summary

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    Official Symbol
    2810459M11Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2810459M11 geneprovided by MGI
    Primary source
    MGI:MGI:1920042
    See related
    Ensembl:ENSMUSG00000026227 AllianceGenome:MGI:1920042
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Is expressed in brain ventricular layer and liver lobe. Orthologous to human C2orf72 (chromosome 2 open reading frame 72). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in liver adult (RPKM 16.2), genital fat pad adult (RPKM 13.1) and 15 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 2810459M11Rik in Genome Data Viewer
    Location:
    1 C5; 1 43.94 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (85973585..85983178)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (86045863..86055456)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 617 pseudogene Neighboring gene spermatogenesis associated 3 Neighboring gene STARR-positive B cell enhancer ABC_E1552 Neighboring gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 Neighboring gene predicted gene, 22786 Neighboring gene 5-hydroxytryptamine (serotonin) receptor 2B Neighboring gene predicted gene, 53570

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Protein-protein interaction panel using mouse full-length cDNAs. Suzuki H, et al. Genome Res, 2001 Oct. PMID 11591653, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C2orf72 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001144992.1 → NP_001138464.1  uncharacterized protein C2orf72 homolog isoform 1

      See identical proteins and their annotated locations for NP_001138464.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC102506, BC144821, BI134895
      Consensus CDS
      CCDS48302.1
      UniProtKB/TrEMBL
      B7ZMV2
      Related
      ENSMUSP00000131459.2, ENSMUST00000165824.3
      Conserved Domains (1) summary
      pfam15443
      Location:131 → 285
      DUF4630; Domain of unknown function (DUF4630)

    2. NM_001144993.1 → NP_001138465.1  uncharacterized protein C2orf72 homolog isoform 2

      See identical proteins and their annotated locations for NP_001138465.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the central coding region, compared to variant 1. The resulting isoform (2) is one amino acid shorter than isoform 1.
      Source sequence(s)
      AC102506, BC137675, BI134895
      Consensus CDS
      CCDS78641.1
      UniProtKB/Swiss-Prot
      B2RPZ8, Q9CYS6
      Related
      ENSMUSP00000027429.6, ENSMUST00000027429.11
      Conserved Domains (1) summary
      pfam15443
      Location:131 → 284
      DUF4630; Domain of unknown function (DUF4630)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      85973585..85983178
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9CYS6.2 GenPept UniProtKB/Swiss-Prot:Q9CYS6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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