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    Odr4 odr-4 GPCR localization factor homolog [ Rattus norvegicus (Norway rat) ]

    Gene ID: 304863, updated on 13-Apr-2024

    Summary

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    Official Symbol
    Odr4provided by RGD
    Official Full Name
    odr-4 GPCR localization factor homologprovided by RGD
    Primary source
    RGD:1307830
    See related
    Ensembl:ENSRNOG00000002473 AllianceGenome:RGD:1307830
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307830
    Summary
    Predicted to be involved in protein localization. Predicted to be integral component of membrane. Orthologous to human ODR4 (odr-4 GPCR localization factor homolog). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 131.7), Adrenal (RPKM 111.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Odr4 in Genome Data Viewer
    Location:
    13q21
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (64925573..64974395, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (62369109..62424287, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (67578904..67611605, complement)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene monooxygenase like, pseudogene 1 Neighboring gene uncharacterized LOC134481514 Neighboring gene uncharacterized LOC134481513 Neighboring gene phosducin Neighboring gene translocated promoter region, nuclear basket protein Neighboring gene proteoglycan 4 Neighboring gene hemicentin 1 Neighboring gene small nucleolar RNA U13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in protein localization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protein odr-4 homolog
    NP_001414631.1
    XP_038947274.1
    XP_038947276.1
    XP_038947278.1
    XP_038947279.1
    XP_038947281.1
    XP_063128391.1
    XP_063128392.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427702.1 → NP_001414631.1  protein odr-4 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000013
      UniProtKB/TrEMBL
      A0A8I6AVP7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      64925573..64974395 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063272321.1 → XP_063128391.1  protein odr-4 homolog isoform X4

    2. XM_039091351.2 → XP_038947279.1  protein odr-4 homolog isoform X4

      UniProtKB/TrEMBL
      A0A8I6A685
      Conserved Domains (1) summary
      pfam14778
      Location:28 → 379
      ODR4-like; Olfactory receptor 4-like

    3. XM_039091346.2 → XP_038947274.1  protein odr-4 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8I6A685, A0A8I6AVP7
      Related
      ENSRNOP00000087651.1
      Conserved Domains (1) summary
      pfam14778
      Location:28 → 379
      ODR4-like; Olfactory receptor 4-like

    4. XM_039091353.2 → XP_038947281.1  protein odr-4 homolog isoform X6

      UniProtKB/TrEMBL
      A6ICR3
      Conserved Domains (1) summary
      pfam14778
      Location:1 → 298
      ODR4-like; Olfactory receptor 4-like

    5. XM_039091350.1 → XP_038947278.1  protein odr-4 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8I6A685, D3ZV63
      Related
      ENSRNOP00000056732.3, ENSRNOT00000059984.6
      Conserved Domains (1) summary
      pfam14778
      Location:5 → 349
      ODR4-like; Olfactory receptor 4-like

    6. XM_039091348.2 → XP_038947276.1  protein odr-4 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8I6A685
      Conserved Domains (1) summary
      pfam14778
      Location:28 → 379
      ODR4-like; Olfactory receptor 4-like

    7. XM_063272322.1 → XP_063128392.1  protein odr-4 homolog isoform X5

    RNA

    1. XR_005492531.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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