U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Camk2d calcium/calmodulin-dependent protein kinase II delta [ Rattus norvegicus (Norway rat) ]

    Gene ID: 24246, updated on 25-Apr-2024

    Summary

    Official Symbol
    Camk2dprovided by RGD
    Official Full Name
    calcium/calmodulin-dependent protein kinase II deltaprovided by RGD
    Primary source
    RGD:2263
    See related
    Ensembl:ENSRNOG00000011589 AllianceGenome:RGD:2263
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    CAMK1; Camk2; Camki; RATCAMKI
    Summary
    Enables calmodulin-dependent protein kinase activity; nitric-oxide synthase binding activity; and transmembrane transporter binding activity. Involved in several processes, including positive regulation of intracellular signal transduction; protein phosphorylation; and regulation of calcium ion transmembrane transport. Located in cytosol; nucleus; and perinuclear region of cytoplasm. Part of protein-containing complex. Used to study epilepsy. Orthologous to human CAMK2D (calcium/calmodulin dependent protein kinase II delta). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Heart (RPKM 281.6), Brain (RPKM 235.3) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Camk2d in Genome Data Viewer
    Location:
    2q42
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (217698324..217961898)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (215023785..215287351)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (230900907..231132207)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134478885 Neighboring gene histidine triad nucleotide binding protein 1, pseudogene 2 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene ankyrin 2 Neighboring gene uncharacterized LOC120101096

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC124639

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables calmodulin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables calmodulin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables calmodulin-dependent protein kinase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables calmodulin-dependent protein kinase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables calmodulin-dependent protein kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables calmodulin-dependent protein kinase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables nitric-oxide synthase binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables protein homodimerization activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein kinase activity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    enables protein serine kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein serine/threonine kinase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables sodium channel inhibitor activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables titin binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables transmembrane transporter binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    enables transmembrane transporter binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    enables transmembrane transporter binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within G1/S transition of mitotic cell cycle ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within calcium ion transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cardiac muscle cell contraction IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within cardiac muscle contraction ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cell growth involved in cardiac muscle cell development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in endoplasmic reticulum calcium ion homeostasis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in intracellular potassium ion homeostasis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in negative regulation of sodium ion transmembrane transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of DNA biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of ERK1 and ERK2 cascade IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of G2/M transition of mitotic cell cycle IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of Rac protein signal transduction IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of cardiac muscle cell apoptotic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of cardiac muscle hypertrophy ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of cardiac muscle hypertrophy ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in positive regulation of smooth muscle cell migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of vascular associated smooth muscle cell proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in regulation of calcium ion transmembrane transport via high voltage-gated calcium channel IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in regulation of cardiac muscle cell action potential IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in regulation of cardiac muscle cell action potential involved in regulation of contraction IC
    Inferred by Curator
    more info
    PubMed 
    involved_in regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion IC
    Inferred by Curator
    more info
    PubMed 
    involved_in regulation of cell communication by electrical coupling IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in regulation of cell communication by electrical coupling involved in cardiac conduction IC
    Inferred by Curator
    more info
    PubMed 
    involved_in regulation of cellular localization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of cellular localization ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of membrane depolarization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of protein localization to plasma membrane IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    involved_in regulation of relaxation of cardiac muscle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in regulation of relaxation of cardiac muscle ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    acts_upstream_of_or_within regulation of sodium ion transport ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in relaxation of cardiac muscle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    involved_in response to hypoxia IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in T-tubule ISO
    Inferred from Sequence Orthology
    more info
     
    located_in axon initial segment ISO
    Inferred from Sequence Orthology
    more info
     
    part_of calcium- and calmodulin-dependent protein kinase complex ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in cochlear hair cell ribbon synapse ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in intercalated disc ISO
    Inferred from Sequence Orthology
    more info
     
    located_in neuromuscular junction ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in neuron projection IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in neuronal cell body ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in organelle IEA
    Inferred from Electronic Annotation
    more info
     
    located_in perinuclear region of cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in postsynaptic cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    part_of protein-containing complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in sarcolemma IEA
    Inferred from Electronic Annotation
    more info
     
    located_in sarcoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    calcium/calmodulin-dependent protein kinase type II subunit delta
    Names
    Ca++/calmodulin-dependent protein kinase 2 delta subunit
    Ca++/calmodulin-dependent protein kinase II, delta subunit
    caM kinase II subunit delta
    caM-kinase II delta chain
    caMK-II subunit delta
    calcium/calmodulin-dependent protein kinase (CaM kinase) II delta
    calcium/calmodulin-dependent protein kinase type II delta chain
    NP_036651.1
    XP_006233347.2
    XP_008759674.1
    XP_017446093.1
    XP_017446094.1
    XP_017446096.1
    XP_017446097.1
    XP_017446099.1
    XP_017446101.1
    XP_017446102.1
    XP_017446103.1
    XP_017446105.1
    XP_017446107.1
    XP_038957614.1
    XP_038957616.1
    XP_038957617.1
    XP_038957618.1
    XP_038957621.1
    XP_038957622.1
    XP_038957624.1
    XP_038957631.1
    XP_038957632.1
    XP_063137349.1
    XP_063137351.1
    XP_063137352.1
    XP_063137353.1
    XP_063137354.1
    XP_063137355.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_012519.2NP_036651.1  calcium/calmodulin-dependent protein kinase type II subunit delta

      See identical proteins and their annotated locations for NP_036651.1

      Status: PROVISIONAL

      Source sequence(s)
      J05072
      UniProtKB/Swiss-Prot
      P15791, P97915, P97916, Q3B7L0, Q63904, Q63905, Q63906, Q63907, Q63908
      UniProtKB/TrEMBL
      A0A8L2QW89, A6HVK9
      Related
      ENSRNOP00000016026.6, ENSRNOT00000016026.9
      Conserved Domains (3) summary
      smart00220
      Location:14272
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14086
      Location:12303
      STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
      pfam08332
      Location:380507
      CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      217698324..217961898
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006233285.5XP_006233347.2  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X14

      UniProtKB/TrEMBL
      A0A8I6A1N4
      Conserved Domains (2) summary
      cd14086
      Location:12303
      STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
      pfam08332
      Location:357484
      CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
    2. XM_017590604.3XP_017446093.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X2

      UniProtKB/Swiss-Prot
      P15791, P97915, P97916, Q3B7L0, Q63904, Q63905, Q63906, Q63907, Q63908
      UniProtKB/TrEMBL
      A0A8L2QW89, A6HVK9
      Conserved Domains (3) summary
      smart00220
      Location:14272
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14086
      Location:12303
      STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
      pfam08332
      Location:380507
      CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
    3. XM_017590613.3XP_017446102.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X10

      UniProtKB/TrEMBL
      A0A8I6AT87
      Related
      ENSRNOP00000095840.1
    4. XM_017590610.3XP_017446099.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X6

      UniProtKB/TrEMBL
      A0A8I6AT87
    5. XM_039101696.2XP_038957624.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X19

      UniProtKB/TrEMBL
      A0A8I6AT87
      Related
      ENSRNOP00000097734.1
      Conserved Domains (2) summary
      cd14086
      Location:12303
      STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
      pfam08332
      Location:366493
      CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
    6. XM_017590612.3XP_017446101.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X8

      UniProtKB/TrEMBL
      A0A8I6AL07
      Conserved Domains (2) summary
      cd14086
      Location:12303
      STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
      pfam08332
      Location:360487
      CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
    7. XM_063281282.1XP_063137352.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X17

    8. XM_039101703.2XP_038957631.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X23

      UniProtKB/TrEMBL
      A0A8I6A1N4, A6HVK8
      Related
      ENSRNOP00000015559.7
      Conserved Domains (2) summary
      cd14086
      Location:12303
      STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
      pfam08332
      Location:346473
      CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
    9. XM_017590616.3XP_017446105.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X16

      UniProtKB/TrEMBL
      A0A8I6A1N4
    10. XM_017590607.3XP_017446096.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X3

      UniProtKB/TrEMBL
      A0A8L2QW89
    11. XM_039101686.2XP_038957614.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X7

      UniProtKB/TrEMBL
      A0A8I6AT87
      Conserved Domains (2) summary
      cd14086
      Location:12303
      STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
      pfam08332
      Location:365492
      CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
    12. XM_039101689.2XP_038957617.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X12

      UniProtKB/TrEMBL
      A0A8I6AL07
      Conserved Domains (2) summary
      cd14086
      Location:12303
      STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
      pfam08332
      Location:359486
      CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
    13. XM_017590618.3XP_017446107.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X20

      UniProtKB/TrEMBL
      A0A8I6A1N4
      Conserved Domains (2) summary
      cd14086
      Location:12303
      STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
      pfam08332
      Location:345472
      CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
    14. XM_039101704.2XP_038957632.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X24

      UniProtKB/TrEMBL
      A0A8I6A1N4
      Conserved Domains (2) summary
      cd14086
      Location:12303
      STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
      pfam08332
      Location:345472
      CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
    15. XM_017590614.3XP_017446103.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X15

      UniProtKB/TrEMBL
      A0A8I6A1N4
    16. XM_008761452.3XP_008759674.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X1

      UniProtKB/TrEMBL
      A0A8L2QW89
      Related
      ENSRNOP00000085967.1
      Conserved Domains (3) summary
      smart00220
      Location:14272
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14086
      Location:12303
      STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
      pfam08332
      Location:380507
      CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
    17. XM_063281281.1XP_063137351.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X11

      UniProtKB/TrEMBL
      A0A8I6A550
    18. XM_063281279.1XP_063137349.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X5

    19. XM_063281283.1XP_063137353.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X21

    20. XM_039101688.2XP_038957616.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X9

      UniProtKB/TrEMBL
      A0A8I6AL07
      Conserved Domains (2) summary
      cd14086
      Location:12303
      STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
      pfam08332
      Location:360487
      CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
    21. XM_039101694.2XP_038957622.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X18

      UniProtKB/TrEMBL
      A0A8I6A1N4
      Conserved Domains (2) summary
      cd14086
      Location:12303
      STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
      pfam08332
      Location:346473
      CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
    22. XM_017590608.3XP_017446097.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X4

      UniProtKB/TrEMBL
      A0A8L2QW89
    23. XM_039101690.2XP_038957618.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X13

      UniProtKB/TrEMBL
      A0A8I6AL07
      Conserved Domains (2) summary
      cd14086
      Location:12303
      STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
      pfam08332
      Location:359486
      CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
    24. XM_063281284.1XP_063137354.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X22

    25. XM_017590605.3XP_017446094.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X2

      UniProtKB/Swiss-Prot
      P15791, P97915, P97916, Q3B7L0, Q63904, Q63905, Q63906, Q63907, Q63908
      UniProtKB/TrEMBL
      A0A8L2QW89, A6HVK9
      Conserved Domains (3) summary
      smart00220
      Location:14272
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd14086
      Location:12303
      STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
      pfam08332
      Location:380507
      CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
    26. XM_039101693.2XP_038957621.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X17

      UniProtKB/TrEMBL
      A0A8I6A1N4
      Conserved Domains (2) summary
      cd14086
      Location:12303
      STKc_CaMKII; Catalytic domain of the Serine/Threonine kinase, Calcium/calmodulin-dependent protein kinase Type II
      pfam08332
      Location:346473
      CaMKII_AD; Calcium/calmodulin dependent protein kinase II association domain
    27. XM_063281285.1XP_063137355.1  calcium/calmodulin-dependent protein kinase type II subunit delta isoform X25