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    C19h19orf53 similar to human chromosome 19 open reading frame 53 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 288913, updated on 6-Jun-2024

    Summary

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    Official Symbol
    C19h19orf53provided by RGD
    Official Full Name
    similar to human chromosome 19 open reading frame 53provided by RGD
    Primary source
    RGD:735128
    See related
    Ensembl:ENSRNOG00000049931 AllianceGenome:RGD:735128
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human C19orf53 (chromosome 19 open reading frame 53). [provided by Alliance of Genome Resources, Apr 2022]
    Annotation information
    Annotation category: suggests misassembly
    Expression
    Biased expression in Heart (RPKM 434.0), Kidney (RPKM 427.5) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C19h19orf53 in Genome Data Viewer
    Location:
    19q11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (40819830..40822609)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (23914965..23919149)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (25355815..25358594, complement)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene ribonucleotide reductase regulatory subunit M2 like 1 Neighboring gene YJU2 splicing factor homolog B Neighboring gene methylthioribose-1-phosphate isomerase 1 Neighboring gene zinc finger, SWIM-type containing 4 Neighboring gene microRNA 24-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Nucleotide and (derived) amino acid sequence of a novel peptide from a rat (hypercalcemic) Leydig cell tumor. Rabbani SA, et al. Biochim Biophys Acta, 1992 Dec 29. PMID 1482688
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    leydig cell tumor 10 kDa protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_198728.2 → NP_942023.2  leydig cell tumor 10 kDa protein

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000019
      UniProtKB/Swiss-Prot
      Q05310
      UniProtKB/TrEMBL
      A6IYA1
      Related
      ENSRNOP00000066410.2, ENSRNOT00000072494.3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      40819830..40822609
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q05310.1 GenPept UniProtKB/Swiss-Prot:Q05310

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