Podnl1 podocan-like 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Podnl1provided by RGD
Official Full Name: podocan-like 1provided by RGD
Primary source: RGD:1307753
See related: Ensembl:ENSRNOG00000006741 AllianceGenome:RGD:1307753
Gene type: protein coding
RefSeq status: INFERRED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1307753
Summary: Predicted to be located in collagen-containing extracellular matrix. Predicted to be active in extracellular space. Orthologous to human PODNL1 (podocan like 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Testes (RPKM 27.9), Spleen (RPKM 22.5) and 7 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 19q11

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	19	NC_086037.1 (40932026..40938760, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	19	NC_051354.1 (24027261..24033867, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	19	NC_005118.4 (25240001..25246583)

Chromosome 19 - NC_086037.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Component	Evidence Code	Pubs
located_in collagen-containing extracellular matrix	ISO Inferred from Sequence Orthology more info
is_active_in extracellular space	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: podocan-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001400940.1 → NP_001387869.1 podocan-like protein 1 isoform 1 precursor

Status: INFERRED

Source sequence(s)

JAXUCZ010000019

UniProtKB/TrEMBL

D3ZY32

Related

ENSRNOP00000037510.5, ENSRNOT00000037453.7
NM_001400941.1 → NP_001387870.1 podocan-like protein 1 isoform 2 precursor

Status: INFERRED

Source sequence(s)

JAXUCZ010000019
NM_001400942.1 → NP_001387871.1 podocan-like protein 1 isoform 3

Status: INFERRED

Source sequence(s)

JAXUCZ010000019