U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tarbp1 TAR (HIV-1) RNA binding protein 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 679346, updated on 6-Jun-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Tarbp1provided by RGD
    Official Full Name
    TAR (HIV-1) RNA binding protein 1provided by RGD
    Primary source
    RGD:1589526
    See related
    Ensembl:ENSRNOG00000053574 AllianceGenome:RGD:1589526
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable RNA binding activity. Orthologous to human TARBP1 (TAR (HIV-1) RNA binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Spleen (RPKM 43.7), Brain (RPKM 42.2) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Tarbp1 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (71295588..71346595, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (54398268..54449293, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (59331399..59384807, complement)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134483661 Neighboring gene solute carrier family 35, member F3 Neighboring gene LIM domain-containing protein A-like Neighboring gene cytochrome c oxidase assembly factor 6 Neighboring gene uncharacterized LOC134483663 Neighboring gene uncharacterized LOC134483664

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables tRNA (guanine) methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in tRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    probable methyltransferase TARBP1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      71295588..71346595 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039098287.2 → XP_038954215.2  probable methyltransferase TARBP1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2JYA7

    2. XM_063278867.1 → XP_063134937.1  probable methyltransferase TARBP1 isoform X3

    3. XM_063278868.1 → XP_063134938.1  probable methyltransferase TARBP1 isoform X4

    4. XM_063278870.1 → XP_063134940.1  probable methyltransferase TARBP1 isoform X6

    5. XM_063278871.1 → XP_063134941.1  probable methyltransferase TARBP1 isoform X7

    6. XM_063278866.1 → XP_063134936.1  probable methyltransferase TARBP1 isoform X2

      UniProtKB/TrEMBL
      A0A0G2JYA7

    7. XM_063278869.1 → XP_063134939.1  probable methyltransferase TARBP1 isoform X5

      UniProtKB/TrEMBL
      A6KJ48

    8. XM_063278872.1 → XP_063134942.1  probable methyltransferase TARBP1 isoform X8

    RNA

    1. XR_010060523.1 RNA Sequence

    2. XR_010060524.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.