Llph LLP homolog, long-term synaptic facilitation factor [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Llphprovided by RGD
Official Full Name: LLP homolog, long-term synaptic facilitation factorprovided by RGD
Primary source: RGD:1308261
See related: Ensembl:ENSRNOG00000004316 AllianceGenome:RGD:1308261
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1308261
Summary: Predicted to enable basal RNA polymerase II transcription machinery binding activity. Predicted to be involved in dendrite extension and positive regulation of dendritic spine development. Predicted to be located in chromosome. Predicted to be active in nucleolus. Orthologous to human LLPH (LLP homolog, long-term synaptic facilitation factor). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in Thymus (RPKM 164.6), Muscle (RPKM 130.7) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 7q22

Exon count:: 3

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	7	NC_086025.1 (57620925..57625924)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	7	NC_051342.1 (55735317..55740341)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	7	NC_005106.4 (65004544..65009509)

Chromosome 7 - NC_086025.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH143771 (e-PCR)
- UniSTS:233017

RH133633 (e-PCR)
- UniSTS:216916

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables basal RNA polymerase II transcription machinery binding	IBA Inferred from Biological aspect of Ancestor more info
enables basal RNA polymerase II transcription machinery binding	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in dendrite extension	IBA Inferred from Biological aspect of Ancestor more info
involved_in dendrite extension	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of dendritic spine development	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
located_in chromosome	IEA Inferred from Electronic Annotation more info
located_in chromosome	ISO Inferred from Sequence Orthology more info
is_active_in nucleolus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleolus	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: protein LLP homolog

Names: LLP homolog, long-term synaptic facilitation (Aplysia)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.