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    C5h1orf159 similar to human chromosome 1 open reading frame 159 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 313775, updated on 3-Apr-2024

    Summary

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    Official Symbol
    C5h1orf159provided by RGD
    Official Full Name
    similar to human chromosome 1 open reading frame 159provided by RGD
    Primary source
    RGD:1311517
    See related
    Ensembl:ENSRNOG00000020199 AllianceGenome:RGD:1311517
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311517
    Summary
    Predicted to be integral component of membrane. Orthologous to human C1orf159 (chromosome 1 open reading frame 159). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 36.6), Thymus (RPKM 29.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C5h1orf159 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (171983700..172001373)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (166701485..166719939)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (173542058..173559761)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene tubulin tyrosine ligase like 10 Neighboring gene uncharacterized LOC106182250 Neighboring gene microRNA 3548 Neighboring gene microRNA 200a Neighboring gene microRNA 200b Neighboring gene ring finger protein 223 Neighboring gene single-stranded DNA binding protein 2, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C1orf159 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014072.1 → NP_001014094.1  uncharacterized protein C1orf159 homolog precursor

      See identical proteins and their annotated locations for NP_001014094.1

      Status: PROVISIONAL

      Source sequence(s)
      BC083613
      UniProtKB/TrEMBL
      A0A8I5Y1A7, A0A8I6G5R8, Q5XIR1
      Related
      ENSRNOP00000027347.6, ENSRNOT00000027347.6
      Conserved Domains (1) summary
      pfam14946
      Location:23 → 199
      DUF4501; Domain of unknown function (DUF4501)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      171983700..172001373
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039110125.2 → XP_038966053.1  uncharacterized protein C1orf159 homolog isoform X4

      UniProtKB/TrEMBL
      A0A8I6G5R8
      Conserved Domains (1) summary
      pfam14946
      Location:33 → 167
      DUF4501; Domain of unknown function (DUF4501)

    2. XM_006239579.5 → XP_006239641.1  uncharacterized protein C1orf159 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZKT1, A0A8I6G5R8
      Related
      ENSRNOP00000078377.1
      Conserved Domains (1) summary
      pfam14946
      Location:33 → 209
      DUF4501; Domain of unknown function (DUF4501)

    3. XM_063287841.1 → XP_063143911.1  uncharacterized protein C1orf159 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8I5Y1A7, Q5XIR1

    4. XM_008764365.4 → XP_008762587.2  uncharacterized protein C1orf159 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8I5Y1A7, A0A8I6G5R8, Q5XIR1
      Conserved Domains (1) summary
      pfam14946
      Location:23 → 199
      DUF4501; Domain of unknown function (DUF4501)

    5. XM_063287842.1 → XP_063143912.1  uncharacterized protein C1orf159 homolog isoform X3

    6. XM_008764364.4 → XP_008762586.2  uncharacterized protein C1orf159 homolog isoform X2

      UniProtKB/TrEMBL
      A0A8I5Y1A7, A0A8I6G5R8, Q5XIR1
      Related
      ENSRNOP00000077545.1
      Conserved Domains (1) summary
      pfam14946
      Location:23 → 199
      DUF4501; Domain of unknown function (DUF4501)
    Nucleotide Protein Strain
    Heading Accession and Version

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