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    Gm36793 predicted gene, 36793 [ Mus musculus (house mouse) ]

    Gene ID: 102640815, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Gm36793provided by MGI
    Official Full Name
    predicted gene, 36793provided by MGI
    Primary source
    MGI:MGI:5595952
    See related
    Ensembl:ENSMUSG00000106255 AllianceGenome:MGI:5595952
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Gm36793 in Genome Data Viewer
    Location:
    5 E4; 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (101057866..101061558, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (100910000..100913692, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4930458D05 gene Neighboring gene STARR-positive B cell enhancer mm9_chr5:101285611-101285912 Neighboring gene STARR-seq mESC enhancer starr_13732 Neighboring gene STARR-positive B cell enhancer ABC_E2164 Neighboring gene predicted gene, 46917 Neighboring gene glycerol-3-phosphate acyltransferase 3 Neighboring gene STARR-positive B cell enhancer ABC_E9257 Neighboring gene STARR-positive B cell enhancer ABC_E4769 Neighboring gene predicted gene, 36740 Neighboring gene STARR-seq mESC enhancer starr_13733 Neighboring gene STARR-seq mESC enhancer starr_13734 Neighboring gene predicted gene, 36851 Neighboring gene predicted gene 3032

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_168093.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC107774
      Related
      ENSMUST00000199211.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      101057866..101061558 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_166652.1: Suppressed sequence

      Description
      NR_166652.1: This RefSeq was removed because it was annotated on the wrong strand.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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