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    Tmem92 transmembrane protein 92 [ Mus musculus (house mouse) ]

    Gene ID: 544806, updated on 9-May-2024

    Summary

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    Official Symbol
    Tmem92provided by MGI
    Official Full Name
    transmembrane protein 92provided by MGI
    Primary source
    MGI:MGI:3034723
    See related
    Ensembl:ENSMUSG00000075610 AllianceGenome:MGI:3034723
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Tmem92-ps
    Summary
    Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleoplasm. Orthologous to human TMEM92 (transmembrane protein 92). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See Tmem92 in Genome Data Viewer
    Location:
    11 D; 11 58.94 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (94668043..94673529, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (94777217..94782703, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene cell division cycle 34B Neighboring gene predicted gene 11545 Neighboring gene predicted gene 11546 Neighboring gene expressed sequence AA623943

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (1) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in nucleoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 92
    Names
    transmembrane protein 92, pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034896.2 → NP_001030068.1  transmembrane protein 92 isoform 2 precursor

      See identical proteins and their annotated locations for NP_001030068.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate in-frame splice site in the 3' coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.
      Source sequence(s)
      AL645764
      Consensus CDS
      CCDS36285.1
      UniProtKB/Swiss-Prot
      B7ZWI3
      Related
      ENSMUSP00000128300.2, ENSMUST00000100554.8

    2. NM_001163172.1 → NP_001156644.1  transmembrane protein 92 isoform 1 precursor

      See identical proteins and their annotated locations for NP_001156644.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AL645764, BC172064
      Consensus CDS
      CCDS48890.1
      UniProtKB/Swiss-Prot
      B7ZWI3, E9Q2K3, Q3UT21
      Related
      ENSMUSP00000125159.3, ENSMUST00000162809.3

    RNA

    1. NR_153839.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK139848, AL645764, BC172068

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      94668043..94673529 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B7ZWI3.1 GenPept UniProtKB/Swiss-Prot:B7ZWI3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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