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    Tex50 testis expressed 50 [ Mus musculus (house mouse) ]

    Gene ID: 100502590, updated on 8-Mar-2024

    Summary

    Official Symbol
    Tex50provided by MGI
    Official Full Name
    testis expressed 50provided by MGI
    Primary source
    MGI:MGI:1922183
    See related
    Ensembl:ENSMUSG00000049160 AllianceGenome:MGI:1922183
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930469G21Rik
    Summary
    Orthologous to human TEX50 (testis expressed 50). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 21.7) See more
    Orthologs
    NEW
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    Genomic context

    See Tex50 in Genome Data Viewer
    Location:
    1 H2.1; 1 69.75 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (160984413..160986883, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (161156843..161159314, complement)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:163000837-163001115 Neighboring gene STARR-positive B cell enhancer ABC_E11097 Neighboring gene centromere protein L Neighboring gene kelch-like 20 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:163061431-163061751 Neighboring gene STARR-seq mESC enhancer starr_02813 Neighboring gene STARR-seq mESC enhancer starr_02814 Neighboring gene STARR-seq mESC enhancer starr_02815 Neighboring gene ankyrin repeat domain 45 Neighboring gene STARR-seq mESC enhancer starr_02817 Neighboring gene predicted gene, 51252 Neighboring gene solute carrier family 9, member C2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Clone Names

    • AC138640.3

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    testis-expressed protein 50

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001195189.2NP_001182118.1  testis-expressed protein 50 precursor

      See identical proteins and their annotated locations for NP_001182118.1

      Status: VALIDATED

      Source sequence(s)
      AC138640
      Consensus CDS
      CCDS87903.1
      UniProtKB/TrEMBL
      Q9D5B7
      Related
      ENSMUSP00000154579.2, ENSMUST00000178511.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      160984413..160986883 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)