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    yjhU putative DNA-binding transcriptional regulator YjhU [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948827, updated on 6-Oct-2023

    Summary

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    Gene symbol
    yjhU
    Gene description
    putative DNA-binding transcriptional regulator YjhU
    Primary source
    ASAP:ABE-0014079
    Locus tag
    b4295
    See related
    ECOCYC:G7909
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4284
    Summary
    AFMB Structural Genomics target Number 108 (http://afmb.cnrs-mrs.fr/article171.html). [More information is available at EcoGene: EG12604].
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    Genomic context

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    Sequence:
    NC_000913.3 (4519338..4520324, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YkiE Neighboring gene IS1 family repressor protein InsA Neighboring gene pseudo Neighboring gene putative transporter YjhF Neighboring gene D-xylonate dehydratase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genes and Proteins Involved in qnrS1 Induction. Monárrez R, et al. Antimicrob Agents Chemother, 2018 Sep. PMID 29914953, Free PMC Article
    2. From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach. Maillet I, et al. Proteomics, 2007 Apr. PMID 17366475
    3. Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaea. Pérez-Rueda E, et al. Comput Biol Chem, 2004 Dec. PMID 15556475
    4. Analysis of the Escherichia coli genome VI: DNA sequence of the region from 92.8 through 100 minutes. Burland V, et al. Nucleic Acids Res, 1995 Jun 25. PMID 7610040, Free PMC Article
    5. Protein abundance profiling of the Escherichia coli cytosol. Ishihama Y, et al. BMC Genomics, 2008 Feb 27. PMID 18304323, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables carbohydrate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative DNA-binding transcriptional regulator YjhU

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4519338..4520324 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418715.2 putative DNA-binding transcriptional regulator YjhU [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418715.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A7A3SWH9
      Conserved Domains (1) summary
      COG2390
      Location:12 → 325
      DeoR; DNA-binding transcriptional regulator LsrR, DeoR family [Transcription]
    Nucleotide Protein
    Heading Accession and Version

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