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    LOC102554789 uncharacterized LOC102554789 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102554789, updated on 29-Feb-2024

    Summary

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    Symbol
    LOC102554789provided by RGD
    Full Name
    uncharacterized LOC102554789provided by RGD
    Primary source
    RGD:7663504
    See related
    AllianceGenome:RGD:7663504
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Heart (RPKM 36.9) and Muscle (RPKM 21.1) See more
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    Genomic context

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    See LOC102554789 in Genome Data Viewer
    Location:
    9q36
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (98043582..98155093)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (90595971..90640971)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (97162462..97177182)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 Neighboring gene uncharacterized LOC134480609 Neighboring gene gastrulation brain homeobox 2 Neighboring gene ankyrin repeat and SOCS box-containing 18 Neighboring gene IQ motif containing with AAA domain 1 Neighboring gene uncharacterized LOC134480407 Neighboring gene uncharacterized LOC134480408 Neighboring gene atypical chemokine receptor 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      98043582..98155093
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_010054862.1 RNA Sequence

    2. XR_005489306.2 RNA Sequence

    3. XR_010054860.1 RNA Sequence

    4. XR_010054858.1 RNA Sequence

    5. XR_005489307.2 RNA Sequence

    6. XR_010054859.1 RNA Sequence

    7. XR_010054861.1 RNA Sequence

    8. XR_005489305.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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